Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 0.0e+00 1100.1 748 100.0
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.4e-266 921.8 746 87.4
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 6.8e-89 332.8 758 52.0
ECA233G0881 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.8e-73 279.6 169 87.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 3.4e-72 277.3 762 46.5
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 8.7e-60 236.1 226 61.9
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 1.9e-43 181.8 277 45.5
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 9.6e-43 179.5 284 47.9
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 5.3e-41 173.7 348 39.7
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.7e-39 168.7 368 37.5
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-38 165.6 296 44.3
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 5.5e-38 163.7 359 36.8
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.1e-38 163.3 372 36.8
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.7e-37 161.4 368 38.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 3.5e-37 161.0 390 34.9
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 3.5e-37 161.0 245 46.9
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.5e-37 161.0 266 44.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 6.0e-37 160.2 273 44.7
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 3.9e-36 157.5 271 42.4
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.9e-36 157.5 271 42.4
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 5.1e-36 157.1 301 41.5
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 6.7e-36 156.8 374 37.2
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.1e-35 156.0 266 43.2
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.5e-35 155.6 361 37.4
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.9e-35 155.2 353 39.4
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-35 155.2 385 37.1
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.9e-35 155.2 310 41.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.5e-35 154.8 266 43.2
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 3.3e-35 154.5 236 44.9
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 3.3e-35 154.5 329 40.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.3e-34 150.2 266 42.1
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.1e-33 149.4 267 43.8
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 5.3e-33 147.1 295 40.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 5.3e-33 147.1 294 38.4
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 6.9e-33 146.7 276 41.7
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 2.0e-32 145.2 259 42.5
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.6e-32 144.8 357 38.7
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 4.5e-32 144.1 278 42.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.9e-32 143.7 262 41.2
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 7.6e-32 143.3 312 40.4
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-31 142.1 267 40.4
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.7e-31 142.1 253 43.1
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.9e-30 138.7 287 39.4
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 2.5e-30 138.3 217 45.2
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.2e-30 137.9 364 34.9
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.2e-30 137.9 206 46.1
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.2e-30 137.9 334 35.3
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 5.5e-30 137.1 236 42.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.4e-30 136.3 293 39.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.2e-29 136.0 374 32.9
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 1.2e-29 136.0 274 41.2
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.2e-29 136.0 351 34.2
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.6e-29 134.4 243 42.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 7.9e-29 133.3 248 42.3
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-28 132.5 263 38.8
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.4e-28 132.5 229 42.8
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.8e-28 132.1 362 34.5
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 2.3e-28 131.7 262 38.2
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.3e-28 131.7 312 39.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.0e-28 131.3 339 34.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.9e-28 131.0 229 42.8
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 5.1e-28 130.6 223 42.2
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 8.8e-28 129.8 354 36.4
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.1e-27 129.4 265 40.0
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.9e-27 128.6 299 36.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.5e-27 128.3 229 41.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.5e-27 128.3 321 36.1
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.3e-27 127.5 373 33.5
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 7.4e-27 126.7 219 47.0
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 7.4e-27 126.7 364 36.8
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 9.7e-27 126.3 304 37.8
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 9.7e-27 126.3 265 39.6
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.7e-26 125.6 275 36.4
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.2e-26 125.2 237 40.9
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.3e-26 123.6 340 32.6
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 8.2e-26 123.2 315 36.5
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.4e-25 122.5 260 39.2
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 9.1e-25 119.8 258 39.5
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 2.0e-24 118.6 189 44.4
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.6e-24 118.2 257 38.1
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.9e-24 117.1 237 40.1
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.9e-23 114.8 287 36.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.9e-23 114.8 237 39.2
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 5.5e-22 110.5 210 43.3
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-21 109.0 256 35.5
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 3.6e-21 107.8 165 45.5
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 3.3e-19 101.3 254 37.0
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 4.4e-19 100.9 265 37.0
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 4.4e-19 100.9 332 31.0
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.7e-19 100.5 275 34.9
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 8.2e-18 96.7 370 31.1
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.3e-17 94.0 266 33.8
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.0e-17 93.6 265 33.6
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 9.1e-17 93.2 293 32.1
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.6e-16 91.7 293 31.7
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.4e-16 91.3 346 28.0
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.9e-15 88.2 322 28.0
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 5.0e-15 87.4 290 30.7
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.7e-13 81.6 267 34.8
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 4.7e-13 80.9 326 29.4
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.0e-11 75.5 192 33.9
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 2.4e-09 68.6 244 32.4
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.6e-08 65.9 199 33.7
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 2.0e-08 65.5 143 38.5
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 3.5e-08 64.7 239 31.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 4.5e-08 64.3 116 38.8
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.3e-07 62.8 118 36.4
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 6.5e-07 60.5 105 40.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 8.5e-07 60.1 329 26.7
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.1e-06 59.7 158 30.4
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.5e-06 59.3 103 38.8
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.5e-06 59.3 121 38.8
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 9.4e-06 56.6 354 24.6


User provided reference genes

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