Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.7e-299 1031.9 547 100.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.1e-173 614.0 536 68.7
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.0e-166 590.9 522 67.4
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.1e-141 507.7 539 59.4
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.9e-97 360.1 588 46.3
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.9e-96 357.5 561 43.7
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 5.2e-86 322.8 552 42.6
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.7e-84 317.8 592 40.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 2.8e-84 317.0 578 43.1
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 2.8e-84 317.0 479 47.6
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.4e-83 314.7 575 40.7
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 9.1e-83 312.0 588 41.5
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 7.7e-82 308.9 604 41.4
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.2e-81 307.4 577 42.1
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.9e-81 307.0 577 42.3
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.9e-80 304.3 476 46.2
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.5e-80 303.9 391 51.2
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.5e-80 303.9 590 39.0
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 4.2e-80 303.1 577 40.2
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 3.0e-78 297.0 600 39.8
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 4.0e-78 296.6 614 38.9
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 6.7e-78 295.8 622 39.2
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 3.3e-77 293.5 453 46.6
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 4.8e-76 289.7 572 39.9
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.4e-75 288.1 581 39.8
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.2e-74 285.0 457 43.1
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.6e-74 284.6 559 40.3
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.7e-74 283.9 583 39.6
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.7e-74 283.9 575 40.0
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 4.5e-74 283.1 548 40.0
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 7.7e-74 282.3 572 41.4
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 7.7e-74 282.3 583 38.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.0e-73 282.0 447 44.3
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.0e-73 282.0 560 40.4
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.0e-73 282.0 555 40.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.5e-72 277.3 567 38.4
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 3.2e-72 276.9 574 38.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.2e-72 276.6 559 40.3
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 7.2e-72 275.8 574 39.7
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 9.4e-72 275.4 505 41.2
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 3.6e-71 273.5 508 40.7
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 8.0e-71 272.3 554 38.4
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.0e-70 271.9 551 39.4
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 3.0e-70 270.4 537 38.4
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 3.0e-70 270.4 590 37.6
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 6.8e-70 269.2 558 39.4
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 8.8e-70 268.9 561 38.5
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.2e-69 268.5 566 39.6
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 2.8e-68 263.8 558 38.7
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-67 261.9 595 37.6
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.1e-67 261.9 593 38.3
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.4e-67 261.5 566 39.4
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 5.9e-66 256.1 569 37.8
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-65 255.0 567 36.9
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.3e-65 254.2 565 37.0
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 5.0e-65 253.1 563 36.6
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.5e-65 252.7 568 38.2
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 8.6e-65 252.3 580 38.1
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.1e-64 251.9 457 42.2
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.2e-63 248.4 589 35.0
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.1e-63 247.7 564 36.5
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.8e-63 247.3 533 39.4
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 8.8e-62 242.3 464 39.4
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.2e-61 241.9 565 36.3
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 2.0e-61 241.1 482 39.0
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 9.8e-61 238.8 607 36.4
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 9.8e-61 238.8 504 38.5
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.7e-60 238.0 581 34.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 2.2e-60 237.7 582 34.4
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.8e-60 237.3 561 37.4
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.8e-60 237.3 484 39.3
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 7.0e-59 232.6 579 36.8
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.7e-58 230.7 458 38.4
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.7e-58 230.7 458 38.4
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.5e-58 229.9 565 35.8
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.3e-57 228.4 379 43.3
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 2.3e-57 227.6 625 33.9
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.9e-57 227.3 563 35.0
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 3.3e-56 223.8 542 36.7
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 5.6e-56 223.0 605 35.2
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.2e-55 221.9 433 39.3
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.6e-55 221.5 532 36.5
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.0e-55 219.2 476 38.4
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.4e-54 218.4 376 41.2
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.8e-54 216.1 462 36.4
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.5e-53 214.9 418 39.5
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.0e-53 214.5 381 42.3
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 4.9e-52 209.9 461 37.7
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 4.9e-52 209.9 548 34.5
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 9.2e-51 205.7 579 34.4
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.7e-50 204.1 622 32.2
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.5e-50 203.8 356 40.2
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.3e-49 201.8 595 32.9
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.8e-46 191.4 512 33.4
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.0e-46 190.3 494 33.8
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 3.2e-43 180.6 341 41.1
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 7.0e-43 179.5 564 29.6
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 7.0e-43 179.5 531 32.6
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.6e-42 178.3 571 32.7
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.5e-42 177.2 472 32.0
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 6.0e-42 176.4 561 32.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 6.6e-41 172.9 257 45.5
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.6e-39 168.3 550 31.8
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.6e-39 168.3 479 32.4
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.6e-39 167.2 309 41.7
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 4.7e-39 166.8 571 30.6
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 6.8e-38 162.9 552 31.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 5.4e-35 153.3 527 31.5
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 6.0e-34 149.8 566 29.3
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 7.8e-34 149.4 539 28.8
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.3e-33 148.7 533 29.6
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.0e-33 147.5 391 34.8
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 3.6e-31 140.6 318 37.4
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 4.7e-31 140.2 402 32.6
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 8.1e-31 139.4 463 30.9
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 1.8e-30 138.3 402 32.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 2.0e-29 134.8 541 27.9
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 4.4e-29 133.7 566 28.6
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.3e-28 132.1 293 36.5
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 2.9e-28 131.0 580 29.1
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 7.1e-27 126.3 411 30.4
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.1e-26 124.8 480 30.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 5.1e-25 120.2 532 29.3
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 6.6e-25 119.8 479 29.4
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-24 119.0 479 29.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 9.6e-24 115.9 414 30.7
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.6e-23 114.0 218 39.4
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.4e-22 112.1 300 33.3
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 5.2e-22 110.2 411 29.0
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 5.2e-22 110.2 119 52.1
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 1.5e-21 108.6 281 35.6
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 9.9e-21 105.9 197 40.1
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.9e-19 101.7 454 30.0
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.9e-19 101.7 338 29.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.1e-15 86.3 207 31.4
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 1.2e-13 82.4 211 33.2
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.5e-13 82.0 283 32.5
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 3.2e-11 74.3 142 43.0
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 6.0e-10 70.1 226 35.0
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 2.1e-07 61.6 80 50.0
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 6.2e-07 60.1 125 35.2


User provided reference genes

Program Settings