Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 6.3e-205 717.2 366 100.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 6.6e-162 574.3 369 81.3
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 2.6e-134 482.6 367 71.1
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 9.9e-118 427.6 377 62.6
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 9.9e-118 427.6 379 62.3
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 9.3e-116 421.0 377 61.5
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.6e-115 420.2 374 61.2
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 3.5e-115 419.1 381 60.9
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 3.5e-115 419.1 376 61.7
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.0e-114 416.0 374 60.7
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 6.7e-114 414.8 372 60.8
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 8.7e-114 414.5 383 61.9
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 5.6e-113 411.8 375 60.8
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 9.6e-113 411.0 375 60.3
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 1.6e-112 410.2 376 60.9
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 2.1e-112 409.8 379 62.0
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 2.8e-112 409.5 376 60.9
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 4.8e-112 408.7 378 60.8
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 3.1e-111 406.0 412 58.0
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 5.8e-110 401.7 374 59.4
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 7.6e-110 401.4 380 58.9
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.3e-109 400.6 376 59.3
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.7e-109 400.2 376 59.0
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 4.9e-109 398.7 379 58.0
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 4.9e-109 398.7 369 60.4
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 1.1e-108 397.5 375 59.2
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.9e-108 396.7 375 59.5
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.9e-108 396.7 370 58.6
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 2.5e-108 396.4 381 58.5
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 7.1e-108 394.8 372 59.1
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 9.3e-108 394.4 365 60.0
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.2e-107 394.0 372 59.1
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.7e-107 392.9 376 59.0
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 3.5e-107 392.5 382 58.4
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 6.0e-107 391.7 370 59.2
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 6.0e-107 391.7 374 59.1
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 3.9e-106 389.0 356 62.1
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 3.9e-106 389.0 373 57.9
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 5.1e-106 388.7 387 57.9
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 5.1e-106 388.7 373 60.1
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 6.7e-106 388.3 376 59.0
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 8.7e-106 387.9 370 57.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-105 387.5 374 58.0
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.5e-105 387.1 378 60.3
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.5e-105 387.1 376 58.2
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.9e-105 386.7 376 58.8
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 2.5e-105 386.3 375 56.8
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 5.7e-105 385.2 382 58.4
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 2.1e-104 383.3 371 58.5
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 6.3e-104 381.7 377 58.9
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.4e-103 380.6 371 56.6
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 4.1e-103 379.0 378 57.4
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 2.0e-102 376.7 375 57.3
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 2.6e-102 376.3 374 56.4
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 7.6e-102 374.8 380 55.3
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.3e-101 374.0 417 51.3
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 2.9e-101 372.9 385 56.4
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 6.5e-101 371.7 399 54.6
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 8.5e-101 371.3 380 56.8
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 8.5e-101 371.3 375 58.4
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 1.1e-100 370.9 377 57.0
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.4e-100 370.5 415 51.3
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 2.5e-100 369.8 380 58.2
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.5e-100 369.8 380 58.2
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 4.2e-100 369.0 371 56.1
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 7.2e-100 368.2 377 55.2
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 7.2e-100 368.2 378 57.9
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 9.3e-100 367.9 379 57.3
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.6e-99 365.9 383 56.9
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.3e-98 364.0 394 55.8
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.0e-98 362.8 373 55.0
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.0e-98 362.8 384 56.8
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.1e-97 360.9 379 55.7
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 2.5e-97 359.8 402 54.2
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 2.5e-97 359.8 395 54.7
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.3e-97 359.4 409 53.1
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 9.7e-97 357.8 397 54.2
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.2e-96 356.7 373 54.4
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 3.7e-96 355.9 405 51.9
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 6.3e-96 355.1 384 52.9
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 6.3e-96 355.1 398 53.3
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 2.4e-95 353.2 400 52.5
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.1e-95 352.8 378 55.8
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 3.1e-95 352.8 393 53.7
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 5.3e-95 352.1 388 53.1
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-94 350.5 367 55.0
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 3.4e-94 349.4 395 52.2
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 1.3e-93 347.4 406 52.7
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.3e-93 347.4 403 51.6
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.7e-93 347.1 360 56.9
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 2.9e-93 346.3 402 51.7
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 4.2e-92 342.4 414 50.0
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 7.2e-92 341.7 410 51.7
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 9.4e-92 341.3 412 52.2
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.6e-91 340.5 414 51.9
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 7.9e-91 338.2 405 51.9
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.0e-90 337.8 368 55.7
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.8e-90 337.0 361 53.7
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 2.0e-89 333.6 415 50.1
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 4.4e-89 332.4 411 51.6
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 7.4e-89 331.6 418 50.5
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 2.8e-88 329.7 419 50.8
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 8.2e-88 328.2 405 51.6
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.8e-87 327.0 412 51.0
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 5.3e-87 325.5 418 50.0
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 3.8e-85 319.3 367 50.7
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 5.5e-84 315.5 371 51.5
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 1.8e-82 310.5 324 55.2
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 8.2e-80 301.6 372 52.2
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 8.2e-80 301.6 326 54.6
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 4.2e-76 289.3 431 43.4
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 5.2e-66 255.8 318 50.0
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 2.8e-64 250.0 210 65.7
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 2.8e-64 250.0 210 65.7
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 2.8e-64 250.0 210 65.7
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 3.1e-55 219.9 410 40.5
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 3.3e-52 209.9 486 35.8
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 3.3e-52 209.9 366 39.1
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 9.8e-49 198.4 528 32.4
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 2.0e-46 190.7 283 45.6
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 5.0e-45 186.0 297 41.4
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.4e-42 177.9 136 67.6
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.4e-39 167.9 398 34.2
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 9.5e-36 155.2 367 37.1
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 1.6e-35 154.5 143 60.8
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 4.4e-33 146.4 175 51.4
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 2.9e-32 143.7 138 59.4
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 1.5e-28 131.3 200 45.5
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.2e-25 121.7 332 33.4
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.7e-22 110.5 197 40.6
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 3.5e-22 110.2 108 58.3
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 4.0e-18 96.7 377 26.8
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.0e-18 96.7 377 26.8
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.5e-12 78.2 45 82.2
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 1.8e-10 71.2 315 27.6
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 4.2e-07 60.1 76 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 9.3e-07 58.9 127 31.5
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 7.9e-06 55.8 115 34.8


User provided reference genes

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