Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 0.0e+00 1921.0 987 100.0
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 0.0e+00 1357.8 981 72.3
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 0.0e+00 1183.7 992 63.6
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 6.0e-303 1044.3 932 59.0
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 1.6e-295 1019.6 999 55.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 6.9e-291 1004.2 1006 54.8
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 7.9e-287 990.7 953 55.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 5.1e-286 988.0 998 53.2
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 8.8e-286 987.3 1003 54.0
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 1.3e-281 973.4 999 52.7
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.4e-280 969.9 1003 53.3
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 2.1e-279 966.1 958 53.7
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 3.0e-278 962.2 998 51.5
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 1.1e-275 953.7 1017 50.9
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.6e-274 949.9 1024 49.5
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 1.5e-272 943.3 1008 51.4
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 3.2e-272 942.2 1003 51.2
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 7.2e-272 941.0 1045 49.0
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 9.4e-272 940.6 968 51.5
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 3.0e-270 935.6 997 50.6
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 7.5e-269 931.0 1004 49.2
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 9.7e-269 930.6 1006 51.8
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 4.8e-268 928.3 1000 50.0
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 8.2e-268 927.5 876 56.6
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.1e-267 925.6 998 49.2
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 9.1e-267 924.1 998 49.3
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 3.8e-265 918.7 1011 49.5
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 5.0e-265 918.3 961 52.4
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 4.2e-264 915.2 1011 49.4
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.7e-263 912.5 1002 49.2
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 8.0e-263 911.0 1009 49.4
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 8.8e-262 907.5 1005 49.5
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 5.4e-259 898.3 1020 49.0
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.2e-258 897.1 1009 49.4
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 1.5e-256 890.2 1059 48.3
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.0e-254 884.0 995 48.9
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.8e-254 883.2 1048 47.2
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 3.0e-254 882.5 997 48.0
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.8e-252 875.9 904 50.4
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 3.1e-251 872.5 994 47.4
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 2.0e-250 869.8 943 48.6
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 2.3e-249 866.3 998 46.9
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 6.6e-249 864.8 826 56.5
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 2.1e-247 859.8 996 47.4
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 5.2e-246 855.1 1006 46.3
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 1.5e-245 853.6 947 48.4
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 7.5e-245 851.3 897 51.4
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.3e-244 850.5 1002 46.3
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 9.2e-243 844.3 981 46.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.7e-242 842.8 990 46.0
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 4.3e-240 835.5 1006 46.2
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 6.2e-239 831.6 1001 46.6
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 2.9e-236 822.8 874 49.9
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.6e-234 817.0 1035 46.1
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 2.7e-234 816.2 921 49.7
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.5e-229 800.4 961 47.8
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 7.1e-227 791.6 1024 43.2
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 1.0e-225 787.7 765 54.5
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 3.0e-225 786.2 1006 45.5
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 1.9e-224 783.5 990 42.9
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 5.6e-224 781.9 973 44.2
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.6e-223 780.4 929 46.3
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 8.1e-223 778.1 893 47.7
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.4e-222 777.3 894 47.8
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 8.4e-220 768.1 970 43.8
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 6.0e-218 761.9 1015 43.2
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 7.8e-218 761.5 890 46.2
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.0e-217 761.1 999 41.5
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 3.0e-217 759.6 1000 40.8
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.1e-216 757.7 907 46.0
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 9.6e-216 754.6 993 41.1
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 4.7e-215 752.3 1017 41.5
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 6.2e-215 751.9 988 41.2
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.4e-214 750.7 995 42.1
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 5.3e-214 748.8 1010 41.8
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 2.6e-213 746.5 998 43.9
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.3e-212 744.2 897 44.9
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 8.4e-212 741.5 1001 41.2
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 7.1e-211 738.4 1001 40.1
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 1.6e-210 737.3 1001 41.0
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 3.5e-210 736.1 1011 43.1
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.0e-209 734.6 1014 40.4
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 5.3e-206 722.2 979 40.1
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.3e-206 722.2 994 40.4
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 1.7e-204 717.2 999 40.0
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 4.2e-203 712.6 1033 42.1
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 4.3e-200 702.6 1037 41.2
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 3.5e-194 682.9 916 42.1
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 1.5e-189 667.5 1002 37.7
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.4e-187 661.0 1013 38.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 2.1e-186 657.1 676 52.2
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 6.3e-183 645.6 820 42.2
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.6e-181 640.2 899 39.9
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.7e-180 637.5 711 48.8
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 4.8e-175 619.4 651 49.6
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 5.0e-172 609.4 928 42.8
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 3.0e-169 600.1 1043 37.5
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 2.9e-164 583.6 807 40.0
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 4.8e-143 513.1 893 35.5
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 9.8e-136 488.8 912 36.1
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.3e-119 435.3 989 29.8
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.9e-70 271.9 998 25.4
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 4.1e-65 254.2 636 29.4
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.9e-54 218.8 324 40.1
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 3.2e-54 218.0 789 26.0
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 5.3e-49 200.7 270 44.4
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 2.6e-48 198.4 189 53.4
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.5e-38 166.0 133 66.2
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 3.2e-38 164.9 629 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 5.4e-25 120.9 635 23.5
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 4.9e-18 97.8 136 40.4
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 1.2e-16 93.2 686 21.6
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 7.5e-11 73.9 117 35.9
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 1.0e-07 63.5 103 34.0


User provided reference genes

Program Settings