Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.4e-115 417.2 203 100.0
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.7e-74 283.1 200 67.5
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.6e-67 257.7 193 66.3
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 2.0e-59 233.0 183 61.7
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 8.4e-58 227.6 197 56.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-57 227.3 196 56.6
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.0e-55 219.2 151 68.9
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.7e-47 193.4 135 65.2
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-44 183.7 195 51.3
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 3.4e-43 179.1 195 50.8
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 6.5e-34 148.3 206 38.8
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 4.2e-33 145.6 211 37.4
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.5e-30 136.3 200 37.5
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 2.1e-29 133.3 93 64.5
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.1e-28 131.0 202 38.6
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.0e-27 126.7 176 38.6
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 2.0e-27 126.7 176 38.6
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.6e-27 126.3 208 38.5
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.6e-27 126.3 156 44.2
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.5e-27 125.6 211 37.0
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.0e-26 124.4 176 38.1
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-26 122.9 208 38.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 5.0e-26 122.1 211 37.0
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 8.4e-26 121.3 207 36.7
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 4.2e-25 119.0 182 39.0
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 9.3e-25 117.9 157 40.8
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.6e-24 117.1 211 36.5
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 3.5e-24 115.9 201 36.3
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 4.6e-24 115.5 178 39.3
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.6e-24 115.5 178 38.2
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 6.1e-24 115.2 201 38.3
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.9e-24 114.8 178 37.6
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.3e-23 114.0 183 38.8
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.0e-23 112.8 156 41.0
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 9.7e-22 107.8 156 40.4
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.6e-21 107.1 178 36.5
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.6e-21 107.1 218 33.5
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 2.2e-21 106.7 208 36.1
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 6.3e-21 105.1 178 36.5
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.2e-21 104.8 171 38.0
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.4e-20 104.0 185 37.8
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.8e-20 103.6 144 40.3
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.4e-20 103.2 218 32.6
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 2.4e-20 103.2 208 35.6
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 2.4e-20 103.2 204 35.3
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-20 102.4 208 35.6
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.1e-20 102.4 175 36.6
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.1e-20 102.4 175 36.6
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 6.9e-20 101.7 163 35.6
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 6.9e-20 101.7 117 41.9
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.0e-20 101.3 192 34.4
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 9.0e-20 101.3 204 34.3
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.2e-19 100.9 211 33.2
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.5e-19 100.5 178 34.8
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.0e-19 100.1 207 34.8
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 3.4e-19 99.4 117 41.0
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 5.9e-19 98.6 117 40.2
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 5.9e-19 98.6 150 38.7
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 5.9e-19 98.6 150 38.7
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 7.7e-19 98.2 204 35.3
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.7e-19 98.2 133 42.9
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 7.7e-19 98.2 117 40.2
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.3e-18 97.4 156 37.2
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.7e-18 97.1 145 37.9
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.8e-18 95.9 137 42.3
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 6.5e-18 95.1 214 32.7
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.4e-17 94.0 124 41.9
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.2e-17 92.4 157 37.6
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 4.2e-17 92.4 202 32.2
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.6e-16 90.5 136 40.4
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.6e-16 90.5 136 39.7
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-16 90.1 157 36.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.6e-16 89.4 213 30.5
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 6.1e-16 88.6 158 36.1
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 6.1e-16 88.6 199 31.2
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 6.1e-16 88.6 136 39.0
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 7.9e-16 88.2 133 39.8
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.0e-15 86.3 208 33.2
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.0e-15 86.3 214 30.8
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.0e-15 86.3 214 30.8
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.0e-15 86.3 117 37.6
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 3.0e-15 86.3 122 37.7
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 3.0e-15 86.3 117 37.6
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 3.0e-15 86.3 122 37.7
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.9e-15 85.9 211 29.9
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.1e-15 85.5 205 29.3
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.1e-15 85.5 128 35.2
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.5e-14 84.0 160 33.8
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.5e-14 84.0 160 33.8
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.0e-14 83.6 171 35.7
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 2.5e-14 83.2 175 30.9
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 2.8e-13 79.7 130 33.8
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-13 79.3 194 32.5
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 4.8e-13 79.0 170 30.6
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 2.4e-12 76.6 201 29.9
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 3.1e-12 76.3 137 34.3
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 5.3e-12 75.5 219 29.2
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.1e-12 74.7 165 33.3
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.5e-11 73.9 74 44.6
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-10 71.2 209 30.6
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.3e-10 70.9 124 36.3
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.7e-10 70.5 202 31.2
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-10 70.1 111 40.5
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-10 69.7 210 31.0
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 3.8e-10 69.3 219 26.9
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 3.8e-10 69.3 211 27.5
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-10 69.3 192 29.2
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.5e-10 68.2 178 29.2
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.9e-09 67.0 124 34.7
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 5.5e-09 65.5 215 26.5
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.2e-09 65.1 205 28.8
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.4e-09 64.7 166 30.7
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-08 64.3 182 27.5
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-08 64.3 213 26.8
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-08 63.9 106 38.7
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.6e-08 63.9 82 39.0
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-08 63.2 143 31.5
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-08 63.2 120 32.5
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.6e-08 62.8 161 31.7
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-08 62.4 142 31.7
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-07 61.2 78 42.3
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.0e-07 61.2 156 31.4
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-07 61.2 109 33.0
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-07 61.2 164 30.5
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 1.8e-07 60.5 200 28.5
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-07 60.1 175 29.7
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-07 60.1 177 28.2
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-07 60.1 167 30.5
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-06 57.8 189 29.1
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 2.0e-06 57.0 81 38.3
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.6e-06 56.6 216 28.2


User provided reference genes

Program Settings