Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.7e-135 485.3 249 100.0
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-74 282.7 255 63.1
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.2e-60 236.5 251 58.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.5e-45 187.2 339 39.2
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 6.3e-39 165.2 289 42.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 7.6e-37 158.3 287 40.1
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 3.0e-33 146.4 270 41.1
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 3.0e-33 146.4 296 38.2
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.9e-32 143.7 299 37.1
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.5e-32 143.3 271 37.3
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.3e-32 142.9 268 37.3
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.3e-31 138.7 285 36.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.4e-30 137.5 288 37.5
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.9e-30 135.2 273 40.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.0e-29 133.7 301 37.5
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 4.5e-29 132.5 259 39.8
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.7e-28 130.6 296 35.1
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 6.5e-28 128.6 285 34.4
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.1e-27 127.9 297 36.7
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.5e-27 126.7 297 36.4
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 4.2e-27 125.9 296 36.1
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.8e-25 120.6 254 34.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.3e-25 120.2 288 37.2
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.7e-24 115.5 295 34.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.8e-23 113.2 293 31.1
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.8e-23 113.2 264 34.5
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 7.0e-22 108.6 284 33.5
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.9e-21 105.5 275 34.9
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 7.7e-21 105.1 278 31.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 7.7e-21 105.1 276 34.1
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.3e-20 104.4 89 58.4
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.2e-20 103.6 240 37.9
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 5.0e-20 102.4 95 57.9
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 5.0e-20 102.4 261 33.3
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.1e-19 101.3 281 32.4
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.9e-19 100.5 261 33.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.5e-19 100.1 266 34.2
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-18 97.4 289 30.8
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 1.6e-18 97.4 240 35.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.7e-18 96.7 248 34.7
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.3e-17 93.6 287 29.3
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.9e-17 92.8 288 29.5
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.2e-17 92.4 274 31.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 5.2e-17 92.4 279 31.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.2e-17 92.4 278 31.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 6.7e-17 92.0 265 32.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 8.8e-17 91.7 278 29.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 8.8e-17 91.7 262 30.9
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.0e-16 90.5 252 32.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 7.4e-16 88.6 279 30.5
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 7.4e-16 88.6 256 30.9
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 9.7e-16 88.2 271 29.5
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 9.7e-16 88.2 263 31.9
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.3e-15 87.8 255 31.8
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.3e-15 87.8 270 31.5
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.7e-15 87.4 272 31.2
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.2e-15 87.0 275 30.2
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 2.2e-15 87.0 254 31.1
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.7e-15 86.3 260 31.9
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 3.7e-15 86.3 245 32.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 8.2e-15 85.1 257 30.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.4e-14 84.3 285 29.5
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.4e-14 84.3 277 28.5
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 2.4e-14 83.6 228 32.0
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-14 83.2 255 32.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.1e-14 83.2 277 30.0
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.1e-14 82.8 254 31.5
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 4.1e-14 82.8 236 31.4
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 4.1e-14 82.8 118 44.1
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.0e-14 82.0 233 29.2
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 7.0e-14 82.0 257 31.9
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 7.0e-14 82.0 80 52.5
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.1e-14 81.6 66 63.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.2e-13 81.3 233 30.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-13 81.3 254 29.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 2.0e-13 80.5 250 31.6
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.0e-13 80.5 255 30.2
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-13 80.1 254 32.3
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.5e-13 79.7 198 32.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.9e-13 79.0 249 29.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.9e-13 79.0 72 56.9
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 7.7e-13 78.6 276 29.3
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.7e-13 78.6 246 29.3
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.0e-12 78.2 253 28.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.0e-12 78.2 259 29.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.3e-12 77.8 245 29.4
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.8e-12 76.3 252 31.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.5e-12 75.5 251 29.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.5e-12 75.5 255 30.2
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.5e-11 74.3 255 30.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.5e-11 74.3 259 30.9
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.5e-11 74.3 255 29.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.5e-11 73.6 260 31.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 3.2e-11 73.2 73 52.1
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 4.2e-11 72.8 234 29.9
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 4.2e-11 72.8 259 29.0
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 5.5e-11 72.4 227 32.2
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 7.2e-11 72.0 264 28.0
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.2e-11 72.0 103 41.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.4e-11 71.6 253 27.3
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 9.4e-11 71.6 253 27.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 9.4e-11 71.6 91 44.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.2e-10 71.2 256 29.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.2e-10 71.2 255 27.5
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.6e-10 70.9 120 37.5
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.1e-10 70.5 239 31.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.1e-10 70.5 104 41.3
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 3.6e-10 69.7 146 31.5
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.6e-10 69.7 67 47.8
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.6e-10 69.7 122 35.2
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 4.7e-10 69.3 67 47.8
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 6.1e-10 68.9 256 28.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 6.1e-10 68.9 256 28.1
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 8.0e-10 68.6 67 47.8
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 8.0e-10 68.6 67 49.3
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 8.0e-10 68.6 66 51.5
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-09 68.2 244 27.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.0e-09 68.2 67 49.3
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.0e-09 68.2 66 51.5
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.4e-09 67.8 196 32.7
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.4e-09 67.8 232 30.6
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.3e-09 67.0 263 26.2
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.3e-09 67.0 257 28.8
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.0e-09 66.2 208 30.3
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.0e-09 66.2 66 47.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 4.0e-09 66.2 109 41.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.0e-09 66.2 93 40.9
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 4.0e-09 66.2 66 53.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 5.2e-09 65.9 68 50.0
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 5.2e-09 65.9 258 26.0
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 5.2e-09 65.9 69 50.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.2e-09 65.9 79 46.8
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.7e-09 65.5 243 29.2
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.7e-09 65.5 66 48.5
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.7e-09 65.5 66 48.5
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.7e-09 65.5 164 33.5
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.2e-08 64.7 64 51.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.2e-08 64.7 71 53.5
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.2e-08 64.7 65 49.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.2e-08 64.7 114 39.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-08 64.7 114 39.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-08 64.7 114 39.5
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.2e-08 64.7 255 28.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.0e-08 63.9 66 51.5
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.0e-08 63.9 68 48.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.6e-08 63.5 70 47.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.3e-08 63.2 66 47.0
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.3e-08 63.2 258 25.6
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 4.4e-08 62.8 98 38.8
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 5.7e-08 62.4 70 47.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 9.7e-08 61.6 71 45.1
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 9.7e-08 61.6 241 27.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.3e-07 61.2 71 46.5
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-07 61.2 264 27.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.7e-07 60.8 70 45.7
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.7e-07 60.8 241 26.6
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 2.2e-07 60.5 65 46.2
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.8e-07 60.1 247 25.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.8e-07 60.1 113 34.5
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.7e-07 59.7 75 42.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 6.3e-07 58.9 199 30.2
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.4e-06 57.0 85 38.8
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 5.3e-06 55.8 138 31.9
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 7.0e-06 55.5 83 42.2
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 7.0e-06 55.5 56 50.0


User provided reference genes

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