Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.1e-50 202.2 111 100.0
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 9.9e-29 130.2 111 67.6
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 4.9e-28 127.9 111 64.9
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 8.4e-28 127.1 111 65.8
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 5.5e-27 124.4 94 75.5
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.6e-18 96.3 110 50.9
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.3e-17 93.2 110 52.7
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.0e-17 92.0 110 49.1
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 3.9e-17 91.7 110 51.8
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 5.1e-17 91.3 110 50.9
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 6.7e-17 90.9 110 53.6
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 6.7e-17 90.9 110 49.1
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 6.7e-17 90.9 110 49.1
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 8.7e-17 90.5 110 47.3
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.5e-16 89.7 110 45.5
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.5e-16 89.0 110 50.9
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.3e-16 88.6 110 50.9
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 3.3e-16 88.6 110 50.0
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 4.3e-16 88.2 110 50.0
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 5.7e-16 87.8 111 49.5
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 5.7e-16 87.8 110 45.5
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 5.7e-16 87.8 110 50.9
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.4e-16 87.4 110 45.5
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 9.7e-16 87.0 110 45.5
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.6e-15 86.3 110 47.3
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.2e-15 85.9 110 46.4
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 2.8e-15 85.5 110 46.4
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.7e-15 85.1 110 45.5
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 8.2e-15 84.0 110 45.5
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 8.2e-15 84.0 110 45.5
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 8.2e-15 84.0 110 43.6
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 8.2e-15 84.0 110 46.4
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 1.1e-14 83.6 110 46.4
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.4e-14 83.2 112 43.8
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.4e-14 83.2 110 45.5
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 1.4e-14 83.2 110 45.5
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 1.4e-14 83.2 110 44.5
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 2.4e-14 82.4 110 46.4
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 3.1e-14 82.0 110 47.3
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.1e-14 82.0 110 46.4
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 3.1e-14 82.0 111 45.9
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 3.1e-14 82.0 109 45.0
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 5.3e-14 81.3 110 43.6
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 5.3e-14 81.3 110 44.5
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 6.9e-14 80.9 110 46.4
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 6.9e-14 80.9 110 46.4
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 9.0e-14 80.5 111 45.0
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 9.0e-14 80.5 111 44.1
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 9.0e-14 80.5 110 43.6
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 9.0e-14 80.5 110 44.5
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-13 80.1 110 43.6
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.2e-13 80.1 111 46.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 1.5e-13 79.7 81 54.3
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.5e-13 79.7 110 46.4
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 1.5e-13 79.7 111 49.5
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.0e-13 79.3 110 43.6
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-13 79.3 111 40.5
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 3.4e-13 78.6 111 40.5
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 3.4e-13 78.6 111 40.5
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 3.4e-13 78.6 98 50.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.4e-13 78.6 110 42.7
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.4e-13 78.6 86 48.8
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 3.4e-13 78.6 110 41.8
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 4.5e-13 78.2 111 40.5
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 4.5e-13 78.2 111 40.5
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 4.5e-13 78.2 111 42.3
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.5e-13 78.2 110 47.3
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 4.5e-13 78.2 110 40.9
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 5.9e-13 77.8 111 44.1
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 5.9e-13 77.8 110 47.3
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 5.9e-13 77.8 110 41.8
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 5.9e-13 77.8 110 41.8
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 5.9e-13 77.8 110 48.2
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 7.6e-13 77.4 81 50.6
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 7.6e-13 77.4 102 44.1
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.3e-12 76.6 110 45.5
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.3e-12 76.6 110 41.8
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.3e-12 76.6 110 42.7
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.7e-12 76.3 110 40.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-12 76.3 110 40.9
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 1.7e-12 76.3 111 41.4
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.7e-12 76.3 90 48.9
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 2.2e-12 75.9 110 41.8
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.9e-12 75.5 111 41.4
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.9e-12 75.5 100 46.0
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.8e-12 75.1 72 59.7
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 3.8e-12 75.1 102 45.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 3.8e-12 75.1 110 41.8
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 5.0e-12 74.7 111 41.4
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 5.0e-12 74.7 110 47.3
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 6.5e-12 74.3 110 39.1
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.5e-12 74.3 110 42.7
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 6.5e-12 74.3 79 50.6
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.1e-11 73.6 111 41.4
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.1e-11 73.6 110 40.9
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.4e-11 73.2 78 48.7
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.4e-11 73.2 110 42.7
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.4e-11 73.2 110 42.7
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.4e-11 73.2 110 42.7
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.4e-11 73.2 106 46.2
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.9e-11 72.8 109 37.6
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.9e-11 72.8 101 43.6
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.9e-11 72.8 72 58.3
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 2.5e-11 72.4 90 43.3
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 2.5e-11 72.4 110 38.2
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 2.5e-11 72.4 95 46.3
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 3.2e-11 72.0 83 49.4
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 3.2e-11 72.0 83 48.2
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.2e-11 71.6 72 56.9
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.2e-11 71.6 72 56.9
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 4.2e-11 71.6 110 37.3
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 5.5e-11 71.2 81 49.4
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 5.5e-11 71.2 115 45.2
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 7.2e-11 70.9 110 40.9
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 9.4e-11 70.5 110 40.0
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 9.4e-11 70.5 110 40.9
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 1.2e-10 70.1 81 50.6
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 1.2e-10 70.1 100 41.0
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 1.2e-10 70.1 101 41.6
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.2e-10 70.1 101 46.5
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.2e-10 70.1 81 49.4
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.6e-10 69.7 110 41.8
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-10 69.7 110 41.8
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-10 69.7 110 41.8
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 2.1e-10 69.3 99 38.4
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.1e-10 69.3 110 40.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 2.7e-10 68.9 110 41.8
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.6e-10 68.6 110 39.1
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 3.6e-10 68.6 111 36.9
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 4.6e-10 68.2 79 48.1
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.6e-10 68.2 96 42.7
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 6.1e-10 67.8 79 49.4
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.0e-09 67.0 111 41.4
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.0e-09 67.0 107 41.1
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.0e-09 67.0 81 54.3
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 1.0e-09 67.0 97 42.3
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 1.4e-09 66.6 101 40.6
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 1.8e-09 66.2 79 49.4
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.0e-09 65.5 95 45.3
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.9e-09 65.1 119 42.0
Cc00_g18350 Coffea canephora HOM05D003660 ORTHO05D003415 1.1e-08 63.5 103 39.8
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.1e-08 63.5 110 42.7
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 1.9e-08 62.8 83 42.2
DCAR_020727 Daucus carota HOM05D003660 ORTHO05D003415 2.5e-08 62.4 138 37.7
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 3.3e-08 62.0 102 40.2
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 3.3e-08 62.0 129 38.8
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-08 61.6 101 39.6
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 4.3e-08 61.6 101 39.6
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 4.3e-08 61.6 110 35.5
Pp3c15_12320 Physcomitrium patens HOM05D003660 ORTHO05D003415 4.3e-08 61.6 84 46.4
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 4.3e-08 61.6 79 46.8
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 5.7e-08 61.2 100 41.0
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 5.7e-08 61.2 81 39.5
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 7.4e-08 60.8 81 40.7
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 9.7e-08 60.5 105 42.9
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 9.7e-08 60.5 84 46.4
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.3e-07 60.1 111 38.7
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.3e-07 60.1 126 35.7
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 1.3e-07 60.1 70 54.3
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 2.8e-07 58.9 91 40.7
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 2.8e-07 58.9 76 43.4
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 3.7e-07 58.5 105 38.1
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 4.8e-07 58.2 110 40.0
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.2e-07 57.4 98 38.8
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.8e-06 56.2 64 51.6
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 2.4e-06 55.8 81 44.4
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 3.1e-06 55.5 85 42.4
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 4.1e-06 55.1 100 37.0
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 4.1e-06 55.1 100 34.0
PGR119G0448 Punica granatum HOM05D003660 ORTHO05D003415 4.1e-06 55.1 110 35.5


User provided reference genes

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