Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 1.9e-193 679.1 363 100.0
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 5.5e-161 571.2 340 82.4
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 2.1e-144 516.2 340 75.0
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 3.3e-129 465.7 340 64.4
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 4.1e-124 448.7 340 65.3
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.3e-122 443.7 340 66.2
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 4.7e-112 408.7 339 61.7
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 8.1e-112 407.9 337 59.1
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 3.1e-111 406.0 339 57.5
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 6.8e-111 404.8 339 60.8
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 3.4e-110 402.5 339 59.0
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 5.8e-110 401.7 336 58.6
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 1.7e-109 400.2 338 58.0
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 2.2e-109 399.8 339 60.5
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 3.2e-108 396.0 337 58.2
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 5.4e-108 395.2 339 58.7
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 9.2e-108 394.4 339 59.6
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.1e-107 393.3 339 56.6
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 7.8e-107 391.3 334 60.5
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 7.8e-107 391.3 337 59.1
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 1.3e-106 390.6 330 57.0
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 1.7e-106 390.2 324 61.4
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 3.0e-106 389.4 337 58.5
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 5.1e-106 388.7 338 58.3
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 6.6e-106 388.3 337 56.1
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 2.5e-105 386.3 342 58.5
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 7.3e-105 384.8 337 58.2
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 2.4e-103 379.8 338 56.8
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 5.2e-103 378.6 339 57.5
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 6.9e-103 378.3 338 56.5
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.0e-102 376.7 337 57.0
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 2.6e-102 376.3 324 59.0
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 7.6e-102 374.8 374 50.3
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 3.8e-101 372.5 338 57.7
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.2e-99 367.5 353 52.1
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 3.0e-98 362.8 337 53.7
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 5.1e-98 362.1 337 55.8
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 5.1e-98 362.1 337 52.5
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 4.3e-97 359.0 341 53.7
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 2.8e-96 356.3 337 55.8
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.4e-95 354.0 341 53.1
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 2.4e-95 353.2 341 52.5
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 3.1e-95 352.8 332 51.8
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 4.0e-95 352.4 340 51.2
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 6.9e-95 351.7 338 55.3
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 9.0e-95 351.3 335 55.5
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 1.5e-94 350.5 327 55.7
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 3.4e-94 349.4 341 54.5
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 1.9e-92 343.6 338 53.6
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 5.4e-92 342.0 335 52.2
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 7.1e-92 341.7 334 50.0
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 7.1e-92 341.7 333 52.3
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 7.1e-92 341.7 340 52.6
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 1.2e-91 340.9 336 51.2
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 1.6e-91 340.5 341 51.9
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 2.1e-91 340.1 340 50.3
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 2.7e-91 339.7 340 52.9
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 3.5e-91 339.3 338 52.4
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 4.6e-91 339.0 343 51.6
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 1.3e-90 337.4 334 53.6
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 1.8e-90 337.0 343 51.0
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 6.7e-90 335.1 338 52.1
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 6.7e-90 335.1 338 52.1
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 8.7e-90 334.7 339 54.0
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 8.7e-90 334.7 343 51.0
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 1.5e-89 334.0 333 52.6
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 2.5e-89 333.2 333 52.6
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 4.3e-89 332.4 333 52.6
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 4.3e-89 332.4 340 48.8
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 4.3e-89 332.4 327 50.8
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 4.8e-88 328.9 338 53.0
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 9.0e-87 324.7 344 48.0
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 1.2e-86 324.3 338 51.8
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 7.6e-86 321.6 335 51.9
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 3.8e-85 319.3 340 50.3
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 4.9e-85 318.9 283 59.7
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 1.9e-84 317.0 324 50.6
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 1.9e-84 317.0 338 48.8
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 2.4e-84 316.6 334 49.4
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 7.1e-84 315.1 328 50.3
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 7.1e-84 315.1 328 50.3
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.8e-82 310.5 334 49.4
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 3.0e-82 309.7 329 48.9
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 6.7e-82 308.5 335 47.5
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 8.7e-82 308.1 300 54.0
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 1.1e-81 307.8 330 48.2
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 9.6e-81 304.7 307 50.2
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 3.1e-79 299.7 339 48.1
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 4.0e-79 299.3 337 46.9
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 1.2e-78 297.7 338 47.3
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 1.5e-78 297.4 337 46.9
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 3.4e-78 296.2 337 47.2
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 3.4e-78 296.2 337 47.2
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 3.4e-78 296.2 337 47.2
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 1.0e-77 294.7 338 48.2
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 4.9e-77 292.4 338 47.9
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 4.2e-76 289.3 340 45.0
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 3.7e-72 276.2 269 53.5
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 2.2e-69 266.9 333 46.5
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 8.5e-69 265.0 338 45.3
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.9e-68 263.8 263 54.0
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 4.2e-68 262.7 223 59.2
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 5.5e-68 262.3 262 52.7
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 2.7e-67 260.0 340 41.5
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 7.9e-67 258.5 277 47.3
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 6.7e-66 255.4 334 43.7
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 2.8e-64 250.0 268 51.9
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 1.5e-62 244.2 271 50.6
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 2.1e-59 233.8 389 38.0
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 7.9e-59 231.9 205 58.5
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 7.9e-59 231.9 170 58.8
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 3.9e-58 229.6 170 57.6
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 2.0e-57 227.3 170 56.5
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 7.4e-57 225.3 265 47.2
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.6e-51 207.6 320 35.6
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 3.6e-51 206.5 307 38.8
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 2.3e-50 203.8 170 54.1
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 1.1e-49 201.4 337 36.5
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 3.3e-49 199.9 172 54.7
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 9.1e-47 191.8 297 39.1
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 1.0e-45 188.3 337 36.2
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 3.7e-40 169.9 173 44.5
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 9.1e-39 165.2 207 43.0
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 2.7e-38 163.7 157 54.8
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 3.2e-36 156.8 163 44.8
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 1.4e-34 151.4 162 50.0
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 7.0e-31 139.0 290 34.8
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 2.7e-30 137.1 144 49.3
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 1.9e-28 131.0 260 31.5
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 2.3e-26 124.0 94 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 4.0e-26 123.2 209 35.9
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 9.5e-20 102.1 107 50.5
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.1e-19 100.9 78 55.1
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 2.0e-17 94.4 74 58.1
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 1.3e-16 91.7 87 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 1.7e-13 81.3 89 41.6
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 9.2e-07 58.9 115 33.0
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 2.1e-06 57.8 63 46.0
Sabra14G0076500 Salix brachista HOM05D000968 ORTHO05D001687 3.5e-06 57.0 161 29.2
Gohir.D11G346400 Gossypium hirsutum HOM05D000968 ORTHO05D003096 7.8e-06 55.8 150 30.0
QL07p048854 Quercus lobata HOM05D000968 ORTHO05D003096 7.8e-06 55.8 148 32.4


User provided reference genes

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