Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4959 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.9e-264 915.2 446 100.0
Lsat_1_v5_gn_8_16120 Lactuca sativa HOM05D003242 ORTHO05D003593 4.4e-160 568.5 441 62.8
HanXRQChr12g0370641 Helianthus annuus HOM05D003242 ORTHO05D003593 1.2e-152 543.9 448 61.8
CSS0004742 Camellia sinensis var. sinensis HOM05D003242 ORTHO05D003593 3.8e-79 299.7 460 40.7
Dinv25974 Davidia involucrata HOM05D001198 ORTHO05D001599 7.7e-72 275.4 402 40.5
Dinv31419 Davidia involucrata HOM05D003242 ORTHO05D003593 8.5e-71 271.9 446 37.2
Cfa001524 Carpinus fangiana HOM05D003242 ORTHO05D003593 6.7e-68 262.3 441 36.3
Cpa.g.sc1.352 Carica papaya HOM05D003242 ORTHO05D003593 2.6e-67 260.4 435 37.2
Haze_17017 Corylus avellana HOM05D003242 ORTHO05D003593 1.6e-64 251.1 441 35.4
Duzib114G0414 Durio zibethinus HOM05D003242 ORTHO05D003593 3.8e-63 246.5 438 35.8
CiPaw.01G282600 Carya illinoinensis HOM05D003242 ORTHO05D003593 2.1e-61 240.7 446 33.6
QL08p058711 Quercus lobata HOM05D003242 ORTHO05D003593 1.4e-60 238.0 440 35.0
Thecc.10G051900 Theobroma cacao HOM05D003242 ORTHO05D003593 3.0e-60 236.9 438 34.7
Sabra08G0035600 Salix brachista HOM05D003242 ORTHO05D003593 4.2e-54 216.5 442 34.8
GSVIVG01016605001 Vitis vinifera HOM05D003242 ORTHO05D003593 2.7e-53 213.8 424 35.8
Manes.10G035100 Manihot esculenta HOM05D003242 ORTHO05D003593 1.8e-52 211.1 438 33.3
TWI63G1712 Tripterygium wilfordii HOM05D003242 ORTHO05D003593 9.8e-51 205.3 426 32.6
MELO3C025465.2 Cucumis melo HOM05D003242 ORTHO05D003593 7.0e-49 199.1 440 33.4
COL.COLO4_14924 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.2e-48 198.4 443 33.0
CsaV3_5G026300 Cucumis sativus L. HOM05D003242 ORTHO05D003593 1.2e-48 198.4 439 33.3
Psat6g236680 Pisum sativum HOM05D003242 ORTHO05D003593 6.6e-47 192.6 352 35.5
Duzib114G0229 Durio zibethinus HOM05D003242 ORTHO05D003593 1.5e-46 191.4 454 31.7
Duzib128G0244 Durio zibethinus HOM05D003242 ORTHO05D003593 1.5e-46 191.4 477 31.0
GSVIVG01016613001 Vitis vinifera HOM05D003242 ORTHO05D003593 4.2e-46 189.9 467 33.4
Potri.008G050800 Populus trichocarpa HOM05D003242 ORTHO05D003593 9.5e-46 188.7 331 36.6
Carub.0004s2156 Capsella rubella HOM05D003242 ORTHO05D003593 2.1e-45 187.6 362 34.0
Glyma.18G286800 Glycine max HOM05D003242 ORTHO05D003593 8.0e-45 185.7 392 31.6
Thecc.10G050400 Theobroma cacao HOM05D003242 ORTHO05D003593 8.0e-45 185.7 480 31.2
THA.LOC104824264 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 1.0e-44 185.3 436 31.9
Glyma.02G094600 Glycine max HOM05D003242 ORTHO05D003593 3.0e-44 183.7 389 31.4
AL4G36880 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 1.5e-43 181.4 370 33.0
Phvul.008G014800 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 1.5e-43 181.4 387 31.3
C07p21570 Brassica napus HOM05D003242 ORTHO05D003593 3.4e-43 180.3 378 31.2
BolC7t42681H Brassica oleracea HOM05D003242 ORTHO05D003593 5.7e-43 179.5 378 31.2
Thhalv10016769m.g Eutrema salsugineum HOM05D003242 ORTHO05D003593 5.7e-43 179.5 362 33.1
Phvul.007G010900 Phaseolus vulgaris HOM05D003242 ORTHO05D003593 5.7e-43 179.5 386 30.6
A05p06890 Brassica napus HOM05D003242 ORTHO05D003593 9.8e-43 178.7 367 35.4
BraA05t19654Z Brassica rapa HOM05D003242 ORTHO05D003593 9.8e-43 178.7 367 35.4
Ciclev10033934m.g Citrus clementina HOM05D003242 ORTHO05D003593 1.3e-42 178.3 407 32.2
TPR.G13993 Trifolium pratense HOM05D003242 ORTHO05D003593 1.3e-42 178.3 389 31.9
C04p08160 Brassica napus HOM05D003242 ORTHO05D003593 2.2e-42 177.6 382 33.8
BcaC06g34938 Brassica carinata HOM05D003242 ORTHO05D003593 2.9e-42 177.2 378 31.0
BcaB02g09114 Brassica carinata HOM05D003242 ORTHO05D003593 3.7e-42 176.8 366 33.9
CANSAT56G4138 Cannabis sativa HOM05D003242 ORTHO05D003593 8.3e-42 175.6 391 30.2
Lj5g0007270 Lotus japonicus HOM05D003242 ORTHO05D003593 8.3e-42 175.6 386 30.6
BolC4t22426H Brassica oleracea HOM05D003242 ORTHO05D003593 1.1e-41 175.3 382 33.5
Glyma.10G290500 Glycine max HOM05D003242 ORTHO05D003593 1.1e-41 175.3 384 30.7
TPR.G15485 Trifolium pratense HOM05D003242 ORTHO05D003593 1.4e-41 174.9 401 29.9
Lalb_Chr21g0307361 Lupinus albus HOM05D003242 ORTHO05D003593 5.4e-41 172.9 385 31.7
AT2G39490 Arabidopsis thaliana HOM05D003242 ORTHO05D003593 9.2e-41 172.2 362 31.2
Duzib114G0435 Durio zibethinus HOM05D003242 ORTHO05D003593 9.2e-41 172.2 398 30.9
Thecc.10G045400 Theobroma cacao HOM05D003242 ORTHO05D003593 1.2e-40 171.8 480 28.5
VMungo1383G3113 Vigna mungo HOM05D003242 ORTHO05D003593 1.2e-40 171.8 387 31.0
Medtr1g115400 Medicago truncatula HOM05D003242 ORTHO05D003593 2.7e-40 170.6 385 31.9
Medtr7g023360 Medicago truncatula HOM05D003242 ORTHO05D003593 2.7e-40 170.6 377 31.6
Sp4g21790 Schrenkiella parvula HOM05D003242 ORTHO05D003593 2.7e-40 170.6 379 31.1
Duzib128G0419 Durio zibethinus HOM05D003242 ORTHO05D003593 3.5e-40 170.2 422 29.9
Thecc.10G045500 Theobroma cacao HOM05D003242 ORTHO05D003593 3.5e-40 170.2 418 31.3
Gohir.D10G222800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.6e-40 169.9 440 29.1
Glyma.20G098700 Glycine max HOM05D003242 ORTHO05D003593 5.9e-40 169.5 387 30.5
Gorai.011G253200 Gossypium raimondii HOM05D003242 ORTHO05D003593 7.8e-40 169.1 440 29.1
VMungo0720G0087 Vigna mungo HOM05D003242 ORTHO05D003593 7.8e-40 169.1 321 31.5
BraA07t29211Z Brassica rapa HOM05D003242 ORTHO05D003593 1.3e-39 168.3 378 30.4
Lj1g0018411 Lotus japonicus HOM05D003242 ORTHO05D003593 1.3e-39 168.3 392 30.9
Lj1g0028035 Lotus japonicus HOM05D003242 ORTHO05D003593 1.3e-39 168.3 394 32.0
Thecc.10G050500 Theobroma cacao HOM05D003242 ORTHO05D003593 2.3e-39 167.5 471 30.4
BcaB06g29089 Brassica carinata HOM05D003242 ORTHO05D003593 2.9e-39 167.2 380 30.0
CARHR134360 Cardamine hirsuta HOM05D003242 ORTHO05D003593 5.0e-39 166.4 383 30.8
FAN01G0554 Fragaria x ananassa HOM05D003242 ORTHO05D003593 5.0e-39 166.4 338 33.4
THA.LOC104810016 Tarenaya hassleriana HOM05D003242 ORTHO05D003593 6.6e-39 166.0 383 31.6
Thecc.10G049100 Theobroma cacao HOM05D003242 ORTHO05D003593 1.1e-38 165.2 351 33.6
Thecc.10G048800 Theobroma cacao HOM05D003242 ORTHO05D003593 1.9e-38 164.5 471 30.1
Atru.chr12.524 Acer truncatum HOM05D003242 ORTHO05D003593 1.6e-37 161.4 449 28.5
Atru.chr12.550 Acer truncatum HOM05D003242 ORTHO05D003593 1.6e-37 161.4 311 35.7
Duzib114G0412 Durio zibethinus HOM05D003242 ORTHO05D003593 2.1e-37 161.0 499 28.1
Duzib114G0726 Durio zibethinus HOM05D003242 ORTHO05D003593 2.8e-37 160.6 446 29.1
Thecc.10G045700 Theobroma cacao HOM05D003242 ORTHO05D003593 6.1e-37 159.5 477 28.7
Thecc.10G049000 Theobroma cacao HOM05D003242 ORTHO05D003593 8.0e-37 159.1 325 33.8
A07p14680 Brassica napus HOM05D003242 ORTHO05D003593 1.4e-36 158.3 378 29.9
COL.COLO4_14938 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.4e-36 158.3 467 29.3
Sed0020522 Sechium edule HOM05D003242 ORTHO05D003593 2.3e-36 157.5 320 32.8
Gorai.009G318800 Gossypium raimondii HOM05D003242 ORTHO05D003593 3.1e-36 157.1 501 27.5
Gohir.A05G301000 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.2e-36 156.4 484 28.3
Aa31LG5G20110 Aethionema arabicum HOM05D003242 ORTHO05D003593 1.2e-35 155.2 377 32.6
Gohir.A10G213700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.0e-35 154.5 264 36.4
Lj1g0019421 Lotus japonicus HOM05D003242 ORTHO05D003593 3.4e-35 153.7 324 32.1
COL.COLO4_14935 Corchorus olitorius HOM05D003242 ORTHO05D003593 5.8e-35 152.9 476 29.8
Gohir.A05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 5.8e-35 152.9 470 28.9
FvH4_7g21530 Fragaria vesca HOM05D003242 ORTHO05D003593 1.3e-34 151.8 338 32.2
FAN06G1309 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.3e-34 151.8 338 32.2
FAN06G2116 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.3e-34 151.8 338 32.2
Gohir.D05G300800 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.7e-34 151.4 486 27.2
Duzib128G1376 Durio zibethinus HOM05D003242 ORTHO05D003593 2.2e-34 151.0 425 28.0
MD01G1122000 Malus domestica HOM05D003242 ORTHO05D003593 2.2e-34 151.0 327 32.1
Gohir.D05G300700 Gossypium hirsutum HOM05D003242 ORTHO05D003593 4.9e-34 149.8 502 27.7
Gorai.009G318700 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.9e-34 149.8 484 27.9
CsaV3_5G006860 Cucumis sativus L. HOM05D003242 ORTHO05D003593 1.1e-33 148.7 361 30.2
RcHm_v2.0_Chr1g0365841 Rosa chinensis HOM05D003242 ORTHO05D003593 3.2e-33 147.1 334 31.1
Duzib093G1770 Durio zibethinus HOM05D003242 ORTHO05D003593 4.1e-33 146.7 407 28.7
Ciclev10033375m.g Citrus clementina HOM05D003242 ORTHO05D003593 5.4e-33 146.4 439 29.8
MD07G1191500 Malus domestica HOM05D003242 ORTHO05D003593 5.4e-33 146.4 328 31.1
Dinv37215 Davidia involucrata HOM05D003242 ORTHO05D003593 9.2e-33 145.6 455 29.5
Atru.chr12.549 Acer truncatum HOM05D003242 ORTHO05D003593 1.2e-32 145.2 268 34.7
Gorai.009G317800 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.6e-32 143.3 499 26.9
Gorai.009G318400 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.6e-32 143.3 501 26.7
Gorai.009G318500 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.0e-31 142.1 510 27.1
TAR623G0165 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.7e-31 141.4 460 27.4
Gohir.D05G300300 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.3e-31 141.0 499 26.9
Gohir.D05G300650 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.6e-31 139.4 510 27.1
TAR369G0738 Trochodendron aralioides HOM05D003242 ORTHO05D003593 6.6e-31 139.4 459 27.9
ClCG07G003130 Citrullus lanatus HOM05D003242 ORTHO05D003593 1.1e-30 138.7 323 29.7
GSVIVG01016609001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.5e-30 138.3 518 27.2
ClCG09G020160 Citrullus lanatus HOM05D003242 ORTHO05D003593 2.5e-30 137.5 413 28.8
Duzib114G0233 Durio zibethinus HOM05D003242 ORTHO05D003593 4.3e-30 136.7 446 26.5
Dinv35647 Davidia involucrata HOM05D003242 ORTHO05D003593 1.6e-29 134.8 421 28.3
Gohir.A10G213733 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.1e-29 134.4 441 27.0
Eucgr.A01227 Eucalyptus grandis HOM05D003242 ORTHO05D003593 3.6e-29 133.7 378 29.1
Lj2C101G9 Lonicera japonica HOM05D003242 ORTHO05D003593 3.6e-29 133.7 389 27.5
GSVIVG01025608001 Vitis vinifera HOM05D003242 ORTHO05D003593 3.6e-29 133.7 393 29.0
Eucgr.A01226 Eucalyptus grandis HOM05D003242 ORTHO05D003593 4.7e-29 133.3 372 29.8
COL.COLO4_14872 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.4e-28 131.7 420 28.3
Nn2g12888 Nelumbo nucifera HOM05D003242 ORTHO05D003593 1.4e-28 131.7 467 25.7
FAN10G1923 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.8e-28 131.3 368 30.2
Psat3g184400 Pisum sativum HOM05D003242 ORTHO05D003593 2.3e-28 131.0 277 31.0
Eucgr.A01228 Eucalyptus grandis HOM05D003242 ORTHO05D003593 4.0e-28 130.2 378 28.8
FAN03G2136 Fragaria x ananassa HOM05D003242 ORTHO05D003593 4.0e-28 130.2 338 30.5
Lj3A972T46 Lonicera japonica HOM05D003242 ORTHO05D003593 4.0e-28 130.2 372 29.0
RcHm_v2.0_Chr3g0467581 Rosa chinensis HOM05D003242 ORTHO05D003593 4.0e-28 130.2 390 28.7
Gorai.009G318600 Gossypium raimondii HOM05D003242 ORTHO05D003593 5.2e-28 129.8 431 28.3
Dinv37214 Davidia involucrata HOM05D003242 ORTHO05D003593 6.8e-28 129.4 453 28.9
AL938U10010 Arabidopsis lyrata HOM05D003242 ORTHO05D003593 2.0e-27 127.9 258 32.9
COL.COLO4_14871 Corchorus olitorius HOM05D003242 ORTHO05D003593 7.5e-27 125.9 410 28.5
FAN09G0289 Fragaria x ananassa HOM05D003242 ORTHO05D003593 1.4e-25 121.7 390 28.5
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.4e-25 121.7 369 29.5
COL.COLO4_26932 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.2e-25 120.6 470 26.6
Gohir.A05G300900 Gossypium hirsutum HOM05D003242 ORTHO05D003593 2.3e-23 114.4 376 28.2
Atru.chr12.525 Acer truncatum HOM05D003242 ORTHO05D003593 3.0e-23 114.0 192 35.9
Atru.chr12.523 Acer truncatum HOM05D003242 ORTHO05D003593 3.9e-23 113.6 389 24.7
COL.COLO4_26963 Corchorus olitorius HOM05D003242 ORTHO05D003593 3.9e-23 113.6 405 27.9
COL.COLO4_14873 Corchorus olitorius HOM05D003242 ORTHO05D003593 5.1e-23 113.2 414 25.8
Thecc.05G046000 Theobroma cacao HOM05D003242 ORTHO05D003593 8.6e-23 112.5 442 26.0
Gohir.D05G300600 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.5e-22 111.7 423 26.2
CiPaw.09G187700 Carya illinoinensis HOM05D003242 ORTHO05D003593 3.3e-22 110.5 398 24.9
Ciclev10033929m.g Citrus clementina HOM05D003242 ORTHO05D003593 6.2e-21 106.3 298 28.2
Gohir.A05G300966 Gossypium hirsutum HOM05D003242 ORTHO05D003593 6.2e-21 106.3 325 29.2
Cc06_g03080 Coffea canephora HOM05D003242 ORTHO05D003593 1.1e-20 105.5 432 25.0
vmacro08675 Vaccinium macrocarpon HOM05D003242 ORTHO05D003593 1.8e-20 104.8 380 26.3
Gorai.009G318100 Gossypium raimondii HOM05D003242 ORTHO05D003593 4.0e-20 103.6 343 27.7
MSTRG.19110 Avicennia marina HOM05D003242 ORTHO05D003593 5.2e-20 103.2 397 27.0
Rhsim04G0153700 Rhododendron simsii HOM05D003242 ORTHO05D003593 9.9e-19 99.0 431 26.0
MELO3C034250.2 Cucumis melo HOM05D003242 ORTHO05D003593 1.4e-17 95.1 269 28.6
ECA233G3757 Erigeron canadensis HOM05D003242 ORTHO05D003593 1.4e-17 95.1 211 34.1
Thecc.10G049400 Theobroma cacao HOM05D003242 ORTHO05D003593 2.7e-16 90.9 272 30.1
Thecc.10G049700 Theobroma cacao HOM05D003242 ORTHO05D003593 2.7e-16 90.9 369 25.2
Thecc.10G050300 Theobroma cacao HOM05D003242 ORTHO05D003593 2.7e-16 90.9 340 26.8
Oeu024369.3 Olea europaea HOM05D003242 ORTHO05D003593 4.6e-16 90.1 315 24.8
Thecc.10G048900 Theobroma cacao HOM05D003242 ORTHO05D003593 6.0e-16 89.7 204 31.4
COL.COLO4_14928 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.5e-14 85.1 192 32.3
Gohir.D05G300366 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.5e-14 85.1 196 31.6
COL.COLO4_14939 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.2e-13 82.0 214 31.3
Rhsim04G0153300 Rhododendron simsii HOM05D003242 ORTHO05D003593 6.2e-13 79.7 287 26.1
Gohir.A05G300566 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.4e-12 78.6 475 24.8
Gohir.D05G300333 Gossypium hirsutum HOM05D003242 ORTHO05D003593 1.4e-12 78.6 161 32.3
COL.COLO4_14932 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.8e-12 78.2 200 30.0
COL.COLO4_26933 Corchorus olitorius HOM05D003242 ORTHO05D003593 1.8e-12 78.2 435 23.9
Thecc.10G045600 Theobroma cacao HOM05D003242 ORTHO05D003593 6.8e-12 76.3 187 30.5
Thecc.10G049900 Theobroma cacao HOM05D003242 ORTHO05D003593 6.8e-12 76.3 303 24.1
Lj3A972T44 Lonicera japonica HOM05D003242 ORTHO05D003593 8.9e-12 75.9 277 26.0
Rhsim04G0153600 Rhododendron simsii HOM05D003242 ORTHO05D003593 8.9e-12 75.9 173 32.4
Lj3C972G3 Lonicera japonica HOM05D003242 ORTHO05D003593 1.2e-11 75.5 277 26.0
PSO339G4163 Papaver somniferum HOM05D003242 ORTHO05D003593 2.6e-11 74.3 414 22.7
GSVIVG01016607001 Vitis vinifera HOM05D003242 ORTHO05D003593 1.7e-10 71.6 141 34.0
Hma1.2p1_0192F.1_g083590 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 4.9e-10 70.1 275 27.3
Thecc.10G049200 Theobroma cacao HOM05D003242 ORTHO05D003593 1.4e-09 68.6 130 30.8
Gorai.011G253300 Gossypium raimondii HOM05D003242 ORTHO05D003593 9.3e-09 65.9 151 30.5
Medtr1g115385 Medicago truncatula HOM05D003242 ORTHO05D003593 9.3e-09 65.9 123 32.5
Hma1.2p1_0111F.1_g053140 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 1.6e-08 65.1 275 25.8
Hma1.2p1_1481F.1_g286056 Hydrangea macrophylla HOM05D003242 ORTHO05D003593 1.6e-08 65.1 275 25.8
Thecc.10G049300 Theobroma cacao HOM05D003242 ORTHO05D003593 1.0e-07 62.4 143 30.8
GSVIVG01016608001 Vitis vinifera HOM05D003242 ORTHO05D003593 3.0e-07 60.8 177 29.4
Ca_30311_v3 Cicer arietinum L. HOM05D003242 ORTHO05D003593 3.9e-07 60.5 185 27.0
PGR004G1133 Punica granatum HOM05D003242 ORTHO05D003593 1.1e-06 58.9 398 22.1
Gorai.009G318000 Gossypium raimondii HOM05D003242 ORTHO05D003593 1.9e-06 58.2 133 31.6
Actinidia13120 Actinidia chinensis HOM05D003242 ORTHO05D003593 5.6e-06 56.6 132 30.3
THA.LOC104809547 Tarenaya hassleriana HOM05D007484 ORTHO05D008290 5.6e-06 56.6 231 22.1
Hund02870 Selenicereus undatus HOM05D000576 ORTHO05D000368 9.6e-06 55.8 308 26.3


User provided reference genes

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