Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 0.0e+00 1261.5 845 100.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 1.3e-248 863.6 864 64.7
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 4.9e-245 851.7 889 66.5
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 3.4e-206 722.6 845 67.2
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 4.4e-185 652.5 891 56.0
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.8e-179 633.3 879 52.0
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 7.5e-177 625.2 858 48.4
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.6e-174 617.5 884 55.0
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.6e-174 617.5 877 47.1
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 2.7e-174 616.7 881 45.4
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.5e-174 616.3 884 53.1
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 8.0e-171 605.1 873 52.7
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 1.2e-169 601.3 879 50.7
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 3.4e-169 599.7 874 51.6
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 9.8e-169 598.2 871 53.7
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 6.6e-165 585.5 880 51.9
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 3.3e-164 583.2 867 49.1
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 3.1e-162 576.6 878 51.6
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 5.2e-162 575.9 875 52.7
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.2e-161 574.7 862 50.3
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.7e-160 570.9 951 53.2
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 2.4e-159 567.0 877 42.5
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 3.2e-159 566.6 876 51.8
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 3.2e-159 566.6 876 51.8
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-157 561.6 877 49.6
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 5.1e-157 559.3 870 50.3
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 1.5e-156 557.8 879 49.4
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 5.6e-156 555.8 879 51.0
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 7.3e-156 555.4 876 48.5
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 2.1e-155 553.9 898 49.8
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 4.7e-155 552.7 853 48.4
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 2.6e-153 547.0 863 50.4
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 5.8e-153 545.8 839 46.4
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 9.9e-153 545.0 871 48.0
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 8.3e-152 542.0 877 47.5
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.1e-151 541.6 857 48.1
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 1.4e-151 541.2 872 43.0
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.4e-151 540.4 879 48.7
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.1e-151 539.7 879 48.2
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 7.1e-151 538.9 877 48.0
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 1.6e-150 537.7 878 50.0
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 1.0e-149 535.0 879 47.9
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.0e-149 535.0 859 44.6
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-149 534.3 885 46.6
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-148 530.4 877 47.7
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 9.5e-148 528.5 881 45.1
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 6.2e-147 525.8 842 48.0
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 3.4e-145 520.0 875 48.8
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 9.9e-145 518.5 874 46.8
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 1.3e-144 518.1 876 49.3
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.4e-143 514.6 879 46.3
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 6.0e-142 509.2 869 46.0
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.8e-142 508.8 826 48.5
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 1.1e-140 505.0 812 41.3
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 2.8e-139 500.4 908 46.5
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.1e-138 498.4 881 39.5
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 4.0e-138 496.5 1004 44.6
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 4.0e-138 496.5 883 47.1
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 5.3e-138 496.1 880 45.7
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 9.0e-138 495.4 861 49.5
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 9.0e-138 495.4 887 48.5
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 2.6e-137 493.8 877 46.5
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 6.4e-136 489.2 883 46.0
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.9e-135 487.6 861 48.8
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 7.1e-135 485.7 878 49.9
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.0e-133 481.9 873 46.7
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-133 481.1 885 45.4
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-132 477.2 876 44.3
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.3e-128 464.9 879 44.5
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 2.2e-128 464.2 872 44.6
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.6e-126 458.0 877 46.2
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.6e-126 458.0 878 42.0
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 1.0e-125 455.3 851 41.4
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 1.9e-124 451.1 873 42.3
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 2.8e-123 447.2 883 42.5
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 5.3e-122 443.0 872 43.6
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.3e-122 443.0 752 46.3
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.0e-120 438.7 730 49.5
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 6.0e-118 429.5 812 41.4
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-116 424.5 597 45.7
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.3e-115 421.8 879 42.3
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.1e-115 421.0 612 45.3
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 8.2e-115 419.1 858 45.2
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 8.2e-115 419.1 858 45.2
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 2.4e-114 417.5 874 41.1
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 2.0e-113 414.5 846 42.4
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 7.6e-113 412.5 884 44.7
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 2.2e-112 411.0 845 40.7
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.1e-111 408.7 839 37.5
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.5e-110 403.7 815 38.4
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 3.9e-109 400.2 874 39.2
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 6.7e-109 399.4 855 41.8
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 3.7e-107 393.7 658 40.6
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 4.1e-106 390.2 882 38.9
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 6.9e-106 389.4 744 41.9
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.0e-106 389.0 611 42.6
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.2e-105 388.7 863 38.8
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 7.7e-105 386.0 842 36.3
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.3e-104 385.2 853 37.3
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 2.1e-102 377.9 877 40.5
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 2.7e-102 377.5 657 49.6
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.3e-101 374.4 878 36.2
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 4.3e-100 370.2 823 43.3
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 1.8e-98 364.8 597 41.7
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 5.3e-98 363.2 873 37.2
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 1.3e-96 358.6 899 37.2
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 7.2e-95 352.8 899 35.6
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 9.4e-95 352.4 899 35.6
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 9.4e-95 352.4 899 35.6
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 4.4e-92 343.6 934 33.8
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 4.4e-92 343.6 726 44.4
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 9.7e-92 342.4 606 40.1
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.1e-90 337.0 882 35.3
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.5e-89 335.1 882 35.0
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 1.7e-88 331.6 447 47.2
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 1.7e-88 331.6 651 47.6
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 6.5e-88 329.7 882 34.8
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.1e-87 328.9 886 35.1
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 5.2e-85 320.1 629 43.4
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 4.8e-83 313.5 933 33.4
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.8e-82 311.6 878 33.9
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 4.5e-81 307.0 537 38.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.1e-78 298.1 568 38.7
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 9.8e-76 289.3 900 32.7
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 5.0e-72 276.9 485 53.6
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 2.1e-70 271.6 462 36.8
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.2e-68 265.8 387 45.2
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-64 250.4 348 44.3
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-64 250.4 348 44.3
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.4e-61 242.3 278 51.8
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.8e-61 241.9 276 60.1
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.9e-59 234.6 275 56.0
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 1.4e-58 232.3 794 31.5
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.8e-54 218.0 375 58.7
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 4.0e-53 214.2 469 36.9
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 2.5e-47 194.9 638 30.4
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.3e-47 194.5 189 59.3
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 6.8e-45 186.8 354 37.3
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.0e-40 172.9 624 32.1
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 1.7e-40 172.2 136 72.8
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 3.0e-40 171.4 181 54.7
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 3.9e-40 171.0 137 70.1
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.5e-39 169.1 275 38.2
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 5.8e-36 157.1 236 44.1
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 3.0e-32 144.8 187 48.7
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 3.0e-32 144.8 187 48.7
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 5.1e-32 144.1 120 62.5
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 5.2e-29 134.0 103 70.9
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 1.2e-28 132.9 250 43.2
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 1.2e-28 132.9 250 43.2
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 5.8e-28 130.6 190 44.2
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 1.7e-27 129.0 121 58.7
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.3e-24 119.4 180 45.6
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.3e-24 118.6 488 38.1
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 2.3e-24 118.6 123 57.7
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.0e-21 106.7 319 32.0
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 9.0e-21 106.7 567 29.3
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.8e-20 104.0 256 34.4
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 3.8e-19 101.3 103 53.4
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 1.9e-18 99.0 123 48.0
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 1.2e-17 96.3 433 26.6
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 1.3e-16 92.8 121 47.1
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 1.7e-16 92.4 130 43.8
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 1.7e-16 92.4 117 43.6
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 1.7e-16 92.4 141 37.6
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 2.3e-16 92.0 184 36.4
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 5.6e-15 87.4 190 66.8
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 2.6e-12 78.6 68 61.8
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 7.6e-12 77.0 89 51.7
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 4.9e-11 74.3 51 78.4
MBI19_g10187_MAGBIO Magnolia biondii HOM05D020163 ORTHO05D003909 4.9e-11 74.3 120 40.8
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 6.4e-11 73.9 101 43.6
ECA236G3179 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.4e-10 72.8 102 52.9
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 1.9e-10 72.4 68 54.4
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 9.3e-10 70.1 100 49.0
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 9.3e-10 70.1 489 22.5
SEGI_01702 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 2.1e-09 68.9 97 41.2
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 2.7e-09 68.6 77 50.6
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 6.0e-09 67.4 55 61.8
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 7.9e-09 67.0 88 50.0
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 3.9e-08 64.7 71 62.0
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 2.5e-07 62.0 99 40.4
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 1.3e-06 59.7 89 47.2


User provided reference genes

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