Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 0.0e+00 1414.1 736 100.0
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 0.0e+00 1113.6 746 79.9
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.2e-295 1019.6 736 74.0
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.6e-278 960.3 746 67.6
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 7.2e-277 957.2 756 67.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 6.8e-275 950.7 767 66.1
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.6e-271 939.5 720 69.9
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 6.6e-270 934.1 738 66.9
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 9.5e-269 930.2 795 64.3
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 6.8e-267 924.1 738 66.3
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.1e-264 916.8 762 65.1
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 9.2e-264 913.7 751 65.0
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.6e-263 912.9 758 64.4
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.9e-262 908.3 784 62.6
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 1.9e-261 906.0 752 63.8
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 2.8e-260 902.1 757 63.5
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 5.8e-258 894.4 756 63.8
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.9e-257 892.1 762 63.4
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 2.1e-255 885.9 756 63.2
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.7e-255 885.6 763 63.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.5e-255 885.2 745 63.8
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 4.6e-255 884.8 747 63.3
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 6.0e-255 884.4 754 64.2
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 7.8e-255 884.0 750 63.5
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.7e-254 882.9 753 62.5
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.0e-254 882.1 751 62.7
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.9e-254 881.7 750 63.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 9.5e-253 877.1 758 62.5
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.1e-252 875.9 749 62.2
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.1e-251 873.6 740 62.7
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 5.2e-251 871.3 752 62.2
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 6.8e-251 870.9 763 62.0
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.2e-250 870.2 742 62.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.2e-250 870.2 772 61.1
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 2.6e-250 869.0 777 63.1
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.3e-249 866.7 739 62.1
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 3.7e-249 865.1 722 64.1
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.9e-249 864.8 812 58.9
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.9e-248 862.8 783 60.4
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 2.4e-248 862.4 740 63.4
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 4.1e-248 861.7 748 61.9
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 4.1e-248 861.7 740 63.0
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.6e-247 859.8 753 62.2
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 4.6e-247 858.2 749 61.1
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.0e-246 857.1 758 61.1
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.0e-246 857.1 727 62.6
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.3e-246 855.9 732 62.2
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.9e-246 855.1 731 61.3
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 5.1e-246 854.7 742 61.6
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 5.1e-246 854.7 740 62.2
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.4e-243 846.7 777 60.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.4e-243 846.7 751 61.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.8e-243 846.3 776 59.4
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 4.2e-240 835.1 744 61.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 6.0e-239 831.2 779 59.1
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 6.0e-239 831.2 741 62.5
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 7.8e-239 830.9 759 61.3
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 7.8e-239 830.9 733 61.0
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 3.9e-238 828.6 721 63.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 6.6e-238 827.8 742 59.3
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.5e-237 826.6 736 61.0
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.5e-237 825.9 732 60.0
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 4.4e-234 815.1 767 58.4
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.3e-233 813.5 756 59.4
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 4.9e-233 811.6 743 58.3
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 8.4e-233 810.8 744 61.3
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 1.6e-231 806.6 744 61.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.1e-229 800.4 825 54.5
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 2.5e-229 799.3 774 56.6
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 4.8e-228 795.0 682 62.8
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 7.6e-226 787.7 736 57.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 6.0e-223 778.1 693 60.3
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.8e-222 776.5 771 55.0
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.1e-221 773.9 773 54.9
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 9.0e-219 764.2 772 53.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.5e-218 763.5 721 57.3
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 2.2e-217 759.6 721 56.4
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 4.2e-216 755.4 727 55.6
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 7.1e-216 754.6 733 56.3
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 4.6e-215 751.9 723 56.6
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 6.0e-215 751.5 928 50.1
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.3e-214 750.4 721 55.6
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.8e-214 750.0 720 55.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 2.7e-207 726.1 723 55.6
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 7.4e-205 718.0 775 50.8
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 5.9e-202 708.4 763 52.4
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 5.9e-202 708.4 722 51.7
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 7.4e-197 691.4 732 53.3
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 6.1e-191 671.8 735 52.4
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.4e-189 665.6 646 57.1
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 6.3e-188 661.8 616 59.9
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.2e-186 657.5 739 51.0
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 9.4e-184 647.9 434 73.7
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 6.1e-175 618.6 687 50.5
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 3.4e-173 612.8 744 48.1
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 3.4e-173 612.8 744 48.1
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 3.4e-173 612.8 744 48.1
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.7e-172 610.5 738 46.3
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 6.3e-172 608.6 700 50.4
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.5e-168 596.7 594 56.7
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 8.0e-167 591.7 828 42.1
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.0e-161 572.4 615 54.5
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.1e-159 567.0 528 58.9
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.3e-153 547.7 397 67.8
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 4.3e-152 542.7 575 50.3
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.5e-149 534.3 715 43.2
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 3.7e-148 529.6 503 59.8
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.0e-145 521.5 426 60.8
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.9e-145 519.6 487 61.2
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 6.4e-140 502.3 533 55.9
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 4.2e-115 419.9 574 43.7
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.2e-109 401.7 260 75.8
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 6.0e-98 362.8 497 45.7
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.4e-77 293.9 353 47.6
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 2.6e-69 267.7 194 66.5
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 3.5e-69 267.3 239 63.6
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.1e-62 244.2 173 71.1
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.5e-51 206.8 143 67.8
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.4e-49 202.2 118 83.1
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.3e-43 181.0 135 63.7
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.0e-41 176.0 135 60.7
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-37 162.2 114 71.9
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.6e-37 162.2 130 66.2
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 2.7e-37 161.4 131 58.0
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 5.9e-37 160.2 131 61.1
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 8.3e-31 139.8 86 79.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.6e-29 135.6 207 36.7
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-28 132.5 157 42.0
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.5e-27 129.0 399 28.1
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.5e-27 128.3 74 82.4
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.0e-24 118.6 91 61.5
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 3.4e-24 117.9 101 56.4
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.3e-23 115.9 93 59.1
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.3e-23 115.9 93 59.1
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 7.3e-19 100.1 544 22.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 8.9e-17 93.2 331 28.7
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 5.8e-16 90.5 143 35.0
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.9e-11 75.5 47 74.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-09 69.3 58 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 8.4e-07 60.1 70 45.7


User provided reference genes

Program Settings