Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.9e-63 244.6 119 100.0
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.9e-55 218.0 117 91.5
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.5e-51 206.1 119 83.2
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 5.8e-51 204.1 117 83.8
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 9.9e-51 203.4 115 87.8
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 9.9e-51 203.4 117 79.5
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 79.5
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 80.3
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 80.3
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-50 203.0 117 80.3
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 79.8
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 81.5
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 80.7
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 6.4e-50 200.7 117 78.6
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.4e-50 200.7 117 82.9
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 8.4e-50 200.3 117 82.9
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 8.4e-50 200.3 119 79.8
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 8.4e-50 200.3 119 78.2
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.1e-49 199.9 119 79.8
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 82.1
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.4e-49 199.5 119 79.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 82.1
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.9e-49 199.1 119 80.7
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.4e-49 198.7 119 79.0
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 4.2e-49 198.0 119 79.0
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 9.3e-49 196.8 119 79.0
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.2e-48 196.4 117 80.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.6e-48 196.1 119 79.8
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.1e-48 195.7 117 81.2
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.1e-48 195.7 117 81.2
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 2.1e-48 195.7 117 79.5
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.7e-48 195.3 117 77.8
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 2.7e-48 195.3 118 78.8
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 4.6e-48 194.5 116 80.2
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 4.6e-48 194.5 117 80.3
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 80.7
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 77.3
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 6.0e-48 194.1 116 80.2
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 7.9e-48 193.7 116 80.2
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 7.9e-48 193.7 119 74.8
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 7.9e-48 193.7 119 74.8
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 7.9e-48 193.7 114 82.5
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 7.9e-48 193.7 117 79.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.0e-47 193.4 117 80.3
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 77.8
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 3.0e-47 191.8 117 77.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 77.8
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 76.9
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 5.1e-47 191.0 117 76.9
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 5.1e-47 191.0 117 79.5
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 8.7e-47 190.3 118 78.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 76.5
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 76.5
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 76.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.1e-46 189.9 118 78.0
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.5e-46 189.5 121 77.7
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.5e-46 189.5 117 76.9
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-46 189.5 117 76.1
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.9e-46 189.1 117 76.9
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 2.5e-46 188.7 124 74.2
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.3e-46 188.3 117 76.1
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 4.3e-46 188.0 117 76.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 5.6e-46 187.6 116 79.3
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 5.6e-46 187.6 117 75.2
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 7.3e-46 187.2 115 78.3
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 7.3e-46 187.2 115 78.3
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 7.3e-46 187.2 115 78.3
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 7.3e-46 187.2 119 73.9
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 7.3e-46 187.2 115 77.4
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 9.6e-46 186.8 115 77.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 9.6e-46 186.8 115 77.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 9.6e-46 186.8 115 77.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 9.6e-46 186.8 115 77.4
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.6e-46 186.8 117 76.1
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 9.6e-46 186.8 115 78.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.3e-45 186.4 117 76.1
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.3e-45 186.4 117 76.1
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.3e-45 186.4 113 78.8
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.8e-45 185.3 114 78.9
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.8e-45 185.3 115 76.5
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 2.8e-45 185.3 115 76.5
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.8e-45 185.3 118 75.4
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 2.8e-45 185.3 125 72.8
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.8e-45 185.3 116 76.7
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.2e-45 184.1 115 75.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 6.2e-45 184.1 115 75.7
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 8.1e-45 183.7 115 77.4
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 8.1e-45 183.7 115 75.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 8.1e-45 183.7 115 75.7
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.1e-44 183.3 115 78.3
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.1e-44 183.3 119 71.4
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 72.6
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 72.6
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 72.6
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 72.6
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 72.6
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 2.4e-44 182.2 117 74.4
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.1e-44 181.8 115 73.9
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 6.9e-44 180.6 117 71.8
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 9.0e-44 180.3 115 73.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 9.0e-44 180.3 114 82.5
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.2e-43 179.9 118 72.0
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.0e-43 179.1 115 73.9
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.0e-43 179.1 117 70.1
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.0e-43 179.1 167 55.7
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 3.4e-43 178.3 127 69.3
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 9.9e-43 176.8 118 71.2
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.9e-42 175.3 116 71.6
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.8e-42 174.9 117 70.1
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 8.4e-42 173.7 101 80.2
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.4e-41 172.2 117 68.4
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.4e-41 172.2 117 68.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 3.2e-41 171.8 117 68.4
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.2e-40 169.9 119 69.7
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.2e-40 169.9 117 71.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 6.0e-40 167.5 119 69.7
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 7.9e-40 167.2 131 64.9
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.0e-39 166.8 121 67.8
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.8e-39 166.0 119 63.9
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.3e-39 165.6 100 75.0
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 3.0e-39 165.2 114 71.1
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-38 163.3 99 79.8
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-38 163.3 99 79.8
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.6e-38 160.2 100 75.0
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.6e-37 159.5 100 76.0
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.6e-37 159.5 119 65.5
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.4e-36 155.6 98 76.5
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.5e-35 152.9 103 68.0
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.2e-33 144.8 98 71.4
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 4.6e-32 141.4 112 58.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.8e-31 139.4 99 64.6
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.8e-31 139.4 115 56.5
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.7e-31 137.5 116 54.3
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 3.3e-30 135.2 102 65.7
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.8e-28 129.4 116 50.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.2e-26 122.5 95 65.3
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.5e-22 109.8 66 78.8
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.5e-22 109.8 61 86.9
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.2e-21 105.9 61 82.0
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.2e-21 105.9 119 46.2
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.7e-21 105.1 64 76.6
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.7e-21 105.1 65 76.9
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 4.8e-21 104.8 59 83.1
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.1e-20 103.6 61 83.6
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 9.0e-20 100.5 61 80.3
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 9.0e-20 100.5 60 78.3
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.2e-19 100.1 59 79.7
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.5e-19 99.8 61 77.0
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.0e-19 99.4 118 44.9
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 3.4e-19 98.6 156 38.5
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 3.4e-19 98.6 132 40.2
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.0e-18 97.1 54 79.6
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.0e-18 97.1 83 61.4
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.7e-18 96.3 51 84.3
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 2.9e-18 95.5 55 83.6
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 2.5e-17 92.4 50 80.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 2.1e-16 89.4 139 38.8
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 3.8e-10 68.6 70 50.0
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.1e-09 67.0 53 62.3
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 7.2e-09 64.3 35 85.7
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 2.7e-08 62.4 101 43.6


User provided reference genes

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