Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.9e-55 217.6 115 100.0
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 9.3e-38 160.2 118 77.1
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 7.9e-37 157.1 116 75.0
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.8e-34 147.9 115 67.0
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 6.9e-33 144.1 113 69.0
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.2e-32 143.3 116 68.1
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 5.8e-32 141.0 121 66.9
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.6e-32 140.6 118 65.3
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.6e-32 140.6 117 65.8
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 7.6e-32 140.6 116 66.4
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.3e-31 139.8 117 67.5
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.3e-31 139.8 115 67.0
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 2.2e-31 139.0 120 65.0
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.2e-31 139.0 116 64.7
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.9e-31 138.7 117 69.2
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 6.5e-31 137.5 117 69.2
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 8.4e-31 137.1 116 67.2
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.1e-30 136.7 116 65.5
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.4e-30 136.3 117 66.7
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 5.5e-30 134.4 115 62.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 9.3e-30 133.7 121 64.5
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.2e-29 133.3 120 62.5
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.1e-29 132.5 118 61.9
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.1e-29 132.5 120 63.3
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 2.1e-29 132.5 121 62.8
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 2.7e-29 132.1 116 65.5
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.7e-29 132.1 121 64.5
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.6e-29 131.3 118 66.9
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 6.0e-29 131.0 118 66.1
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 6.0e-29 131.0 115 60.9
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 6.0e-29 131.0 115 60.9
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 1.0e-28 130.2 118 62.7
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.3e-28 129.8 118 61.9
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.3e-28 129.8 119 61.3
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 2.3e-28 129.0 117 65.0
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.1e-28 127.9 117 65.0
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.1e-27 126.7 118 62.7
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 1.1e-27 126.7 120 60.8
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.5e-27 126.3 116 61.2
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.5e-27 126.3 121 61.2
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.5e-27 126.3 117 65.0
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.9e-27 125.9 117 65.0
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.9e-27 125.9 121 62.0
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.9e-27 125.9 121 64.5
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.5e-27 125.6 121 62.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.3e-27 124.8 118 61.0
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.7e-27 124.4 114 62.3
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 7.4e-27 124.0 112 64.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 9.6e-27 123.6 116 62.9
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 2.1e-26 122.5 115 60.0
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.7e-26 121.7 115 63.5
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 4.8e-26 121.3 129 58.9
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 6.3e-26 120.9 110 65.5
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 1.1e-25 120.2 117 59.8
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.4e-25 119.0 118 61.9
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 5.3e-25 117.9 115 58.3
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.3e-25 117.9 119 58.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 9.0e-25 117.1 112 62.5
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 57.5
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 57.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 120 57.5
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.5e-24 116.3 115 57.4
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.0e-24 115.9 112 58.9
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 113 57.5
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 113 57.5
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.7e-23 112.8 115 56.5
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.7e-23 112.8 118 56.8
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 1.7e-23 112.8 121 58.7
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 2.2e-23 112.5 121 58.7
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 2.9e-23 112.1 114 57.0
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 3.8e-23 111.7 121 61.2
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 6.5e-23 110.9 121 59.5
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 8.4e-23 110.5 119 55.5
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.4e-22 109.8 115 59.1
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.9e-22 109.4 102 61.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.5e-22 109.0 131 50.4
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 3.2e-22 108.6 153 49.0
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 4.2e-22 108.2 118 57.6
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 4.2e-22 108.2 123 53.7
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 9.3e-22 107.1 121 57.9
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 9.3e-22 107.1 121 57.9
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-21 106.3 107 57.9
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 2.1e-21 105.9 114 55.3
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 3.5e-21 105.1 121 58.7
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 4.6e-21 104.8 121 59.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 7.9e-21 104.0 121 58.7
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.3e-20 103.2 117 52.1
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.8e-20 102.8 119 52.9
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.3e-20 102.4 121 58.7
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 8.7e-20 100.5 121 55.4
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.1e-19 100.1 106 55.7
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 2.5e-19 99.0 112 54.5
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.3e-19 98.6 104 58.7
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 3.3e-19 98.6 112 53.6
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 4.3e-19 98.2 115 53.0
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 7.4e-19 97.4 86 64.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 7.4e-19 97.4 119 51.3
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.3e-18 96.7 116 51.7
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.2e-18 95.9 116 51.7
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 3.7e-18 95.1 121 49.6
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 6.3e-18 94.4 116 50.9
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 6.3e-18 94.4 124 51.6
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 8.2e-18 94.0 116 52.6
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 8.2e-18 94.0 116 52.6
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 8.2e-18 94.0 116 52.6
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 3.1e-17 92.0 120 49.2
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 3.1e-17 92.0 118 48.3
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 4.1e-17 91.7 115 48.7
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 6.9e-17 90.9 111 47.7
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 9.0e-17 90.5 114 50.9
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 9.0e-17 90.5 114 50.9
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.5e-16 89.7 115 53.9
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 3.4e-16 88.6 116 48.3
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 5.9e-16 87.8 118 49.2
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 2.2e-15 85.9 118 47.5
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 5.0e-15 84.7 118 49.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 5.0e-15 84.7 118 49.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 5.0e-15 84.7 118 49.2
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 8.5e-15 84.0 118 46.6
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 8.5e-15 84.0 113 50.4
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.9e-14 82.8 120 45.8
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 3.2e-14 82.0 120 45.8
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.2e-14 82.0 84 54.8
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.2e-14 81.6 69 62.3
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.2e-14 81.6 69 62.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 4.2e-14 81.6 85 56.5
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.6e-13 79.7 81 54.3
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 7.9e-13 77.4 123 44.7
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.3e-12 75.9 70 57.1
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 2.3e-12 75.9 87 48.3
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 2.3e-12 75.9 87 49.4
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 3.0e-12 75.5 113 44.2
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 5.1e-12 74.7 83 54.2
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.5e-11 72.4 195 33.3
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 3.3e-11 72.0 104 46.2
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 3.3e-11 72.0 70 62.9
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 5.7e-11 71.2 114 46.5
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.4e-11 70.9 80 52.5
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.8e-10 68.9 80 51.2
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 4.8e-10 68.2 47 76.6
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-09 67.0 80 51.2
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.8e-09 66.2 101 46.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 2.4e-09 65.9 71 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 1.3e-07 60.1 103 39.8
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 1.7e-07 59.7 40 67.5
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.4e-06 56.6 77 49.4
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 4.2e-06 55.1 38 78.9
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 5.5e-06 54.7 48 60.4


User provided reference genes

Program Settings