Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.2e-140 503.4 311 100.0
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 9.7e-98 360.9 311 78.5
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 2.0e-95 353.2 307 78.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 3.1e-88 329.3 297 74.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.0e-86 324.3 294 73.8
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.5e-85 320.5 294 73.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.1e-84 316.6 278 75.2
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.1e-84 315.1 292 72.6
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.0e-84 314.7 292 72.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-83 313.9 298 72.8
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.8e-83 311.6 307 70.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 3.4e-82 309.3 300 71.7
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 3.4e-82 309.3 300 71.7
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.7e-82 308.5 299 69.9
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.1e-80 304.3 283 72.8
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.4e-80 303.9 287 72.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.8e-80 303.5 307 68.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 3.1e-80 302.8 283 74.2
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 4.1e-80 302.4 295 71.2
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 4.1e-80 302.4 294 72.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 5.3e-80 302.0 285 70.9
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.2e-79 300.8 298 70.1
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.2e-79 300.8 307 69.1
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.6e-79 300.4 280 72.9
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.0e-79 300.1 296 68.9
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.7e-79 299.7 294 72.1
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.5e-79 299.3 294 71.8
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.5e-79 299.3 285 71.6
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.7e-79 298.1 307 68.4
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.0e-78 297.7 304 67.4
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.0e-78 297.7 283 72.1
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.3e-78 297.4 299 70.9
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.3e-78 297.4 313 66.1
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.3e-78 297.4 285 71.6
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.2e-78 296.6 308 51.3
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.9e-78 296.2 283 73.9
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 6.5e-78 295.0 280 65.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 6.5e-78 295.0 284 70.1
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.1e-77 294.3 311 68.5
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.1e-77 294.3 284 71.5
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.1e-77 294.3 312 67.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.9e-77 293.5 289 70.6
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.5e-77 293.1 287 71.8
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 4.2e-77 292.4 289 69.9
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.2e-77 292.4 296 68.6
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.2e-77 291.6 295 71.5
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 7.2e-77 291.6 279 72.8
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 9.4e-77 291.2 295 71.2
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.6e-76 290.4 297 70.0
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 2.7e-76 289.7 280 65.4
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.6e-76 289.3 295 70.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.7e-76 288.9 292 69.5
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.0e-75 287.7 283 70.3
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.0e-75 287.7 296 69.6
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.4e-75 287.3 283 68.6
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.4e-75 287.3 292 69.5
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.4e-75 287.3 280 71.8
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.0e-75 286.2 284 65.1
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 5.2e-75 285.4 279 71.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 6.8e-75 285.0 293 67.9
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 8.8e-75 284.6 283 69.6
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.2e-74 284.3 279 70.6
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.2e-74 284.3 283 68.9
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.2e-74 284.3 280 69.3
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.0e-74 283.5 293 68.3
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.4e-74 282.7 283 68.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.7e-74 282.0 299 65.2
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 9.8e-74 281.2 293 67.2
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 2.2e-73 280.0 304 65.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.2e-73 280.0 283 70.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 6.3e-73 278.5 278 69.8
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 1.8e-72 276.9 305 62.0
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 3.1e-72 276.2 284 60.9
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 5.4e-72 275.4 286 65.0
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 7.0e-72 275.0 280 70.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 3.5e-71 272.7 284 70.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.3e-70 270.8 304 65.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.9e-70 269.6 299 63.5
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 3.8e-70 269.2 279 67.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 3.8e-70 269.2 310 63.2
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.6e-68 263.8 282 67.7
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.6e-68 263.8 278 68.0
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 3.6e-68 262.7 178 68.5
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 6.1e-68 261.9 308 61.4
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.4e-67 260.8 286 64.0
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.8e-67 260.4 295 56.3
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.3e-67 260.0 279 65.6
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 8.9e-67 258.1 178 69.7
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 2.2e-65 253.4 176 68.8
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.1e-64 249.2 177 66.7
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.7e-63 246.5 292 61.3
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 7.8e-63 245.0 282 62.4
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.3e-62 244.2 157 71.3
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 5.0e-62 242.3 311 62.1
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 6.6e-62 241.9 280 58.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.3e-61 239.2 175 66.9
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.8e-60 236.5 294 60.9
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.6e-60 236.1 316 43.0
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 6.1e-60 235.3 279 63.1
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.3e-59 233.4 299 60.2
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 8.9e-59 231.5 354 53.4
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 4.9e-57 225.7 168 61.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 6.4e-57 225.3 277 61.4
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.1e-56 224.6 164 67.1
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.1e-56 224.6 240 71.2
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 3.2e-56 223.0 307 57.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.9e-54 216.1 298 56.7
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 4.3e-53 212.6 298 56.7
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-50 204.5 325 37.2
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.4e-49 198.7 298 54.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-48 197.2 142 66.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 1.9e-48 197.2 276 57.6
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.8e-44 183.3 298 52.7
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 9.9e-42 174.9 263 55.9
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.9e-40 170.6 214 43.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.9e-40 170.6 123 66.7
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 8.6e-38 161.8 164 51.8
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.5e-37 161.0 241 60.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 2.5e-37 160.2 192 72.4
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 5.6e-37 159.1 194 71.1
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.9e-33 146.7 288 49.3
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 3.2e-32 143.3 286 49.3
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.2e-32 142.9 145 46.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.8e-31 138.7 173 43.4
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-28 131.0 191 39.3
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.6e-28 129.8 198 38.4
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.1e-24 118.2 83 62.7
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 2.3e-22 110.5 107 49.5
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 4.3e-21 106.3 163 68.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-18 97.1 141 76.6
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.8e-18 95.9 82 58.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.4e-16 91.3 84 57.1
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 1.8e-14 84.3 134 61.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.9e-14 83.2 128 76.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 5.1e-14 82.8 68 58.8
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.2e-10 71.6 124 76.6
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 3.9e-06 56.6 56 53.6
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.1e-06 56.2 50 54.0
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.7e-06 55.8 33 66.7


User provided reference genes

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