Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 0.0e+00 1330.9 676 100.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 4.5e-249 864.8 627 71.3
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 2.0e-228 796.2 625 68.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 6.1e-206 721.5 635 63.8
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 5.8e-180 635.2 597 60.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 4.6e-177 625.5 640 56.4
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.9e-175 620.2 650 54.5
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-171 607.4 673 52.6
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.3e-168 597.4 649 53.8
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-163 580.5 653 52.2
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 3.5e-161 572.8 648 50.9
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.0e-160 569.7 602 53.8
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 2.5e-159 566.6 628 51.6
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 5.6e-159 565.5 613 52.5
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 1.8e-157 560.5 635 50.2
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.2e-156 557.8 617 51.7
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.2e-155 553.5 628 51.9
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.9e-154 550.4 622 51.3
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.2e-154 549.7 622 51.3
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 9.3e-154 548.1 620 51.3
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 2.3e-152 543.5 611 51.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.8e-149 533.9 624 52.2
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.3e-147 527.7 641 51.2
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.4e-146 524.2 618 51.1
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 7.9e-145 518.5 624 50.0
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 7.9e-145 518.5 621 49.9
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.0e-144 518.1 626 48.6
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.3e-144 516.9 621 48.5
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 6.7e-144 515.4 695 47.6
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 9.7e-143 511.5 614 50.2
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.7e-142 509.6 640 48.0
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.4e-141 507.7 651 47.3
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.0e-140 503.8 623 47.8
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.4e-140 503.1 625 49.3
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 4.5e-140 502.7 617 48.0
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.7e-140 501.9 623 49.3
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 6.5e-139 498.8 620 48.2
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.4e-138 497.7 637 48.4
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 1.9e-138 497.3 647 49.1
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 2.5e-138 496.9 618 47.7
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 3.2e-138 496.5 620 48.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.7e-137 493.4 612 47.9
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 6.1e-137 492.3 638 47.3
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 7.9e-137 491.9 620 46.6
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 7.9e-137 491.9 612 47.7
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.0e-136 491.5 638 47.2
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 5.1e-136 489.2 639 46.9
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 6.7e-136 488.8 611 49.9
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 1.1e-135 488.0 603 49.3
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.3e-135 486.1 503 56.7
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 5.7e-135 485.7 636 46.5
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 9.7e-135 485.0 684 44.6
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 8.2e-134 481.9 615 48.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.4e-133 481.1 606 48.5
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 2.4e-133 480.3 620 45.8
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 4.1e-133 479.6 627 46.7
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.2e-132 478.0 635 46.1
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-132 477.2 622 46.0
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.9e-132 475.7 622 46.1
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 5.9e-132 475.7 622 46.3
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.3e-131 474.6 614 48.9
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 3.8e-131 473.0 634 47.9
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.5e-131 472.2 644 46.4
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.1e-130 471.5 633 47.4
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.9e-130 470.7 647 45.4
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 7.2e-130 468.8 625 46.6
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.2e-129 468.0 634 45.6
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 2.7e-129 466.8 614 47.4
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.0e-128 464.9 612 46.2
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.8e-128 464.2 689 43.8
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.3e-128 463.8 620 45.2
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-128 463.4 612 45.6
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 3.0e-128 463.4 616 44.0
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.5e-127 461.1 600 46.7
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.5e-127 461.1 639 46.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 2.0e-127 460.7 623 45.4
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-127 460.3 641 47.1
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 4.4e-127 459.5 603 46.9
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 7.4e-127 458.8 606 46.7
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 3.7e-126 456.4 646 45.4
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 4.8e-126 456.1 643 45.9
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 6.3e-126 455.7 608 47.9
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-125 454.9 690 43.3
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 2.4e-125 453.8 649 45.9
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 5.3e-125 452.6 615 47.0
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.7e-123 447.6 628 45.1
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.2e-123 447.2 624 44.6
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.9e-123 446.8 647 43.7
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 3.8e-123 446.4 603 47.1
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.9e-122 444.1 623 44.6
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.5e-122 443.7 613 46.7
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.2e-122 443.0 717 41.8
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 4.2e-122 443.0 617 44.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 5.5e-122 442.6 619 44.1
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 5.5e-122 442.6 616 44.6
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 9.4e-122 441.8 720 41.2
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 1.2e-121 441.4 609 44.5
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 8.0e-121 438.7 617 43.6
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 9.7e-119 431.8 614 43.8
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.3e-118 431.4 608 44.4
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-118 431.4 610 44.6
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.7e-118 431.0 624 43.9
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 6.3e-118 429.1 613 43.9
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.4e-117 427.9 663 41.8
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.3e-115 421.4 603 44.1
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.5e-114 417.9 621 42.4
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 3.2e-114 416.8 614 42.7
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 3.2e-114 416.8 617 44.2
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 4.2e-114 416.4 617 44.2
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.2e-113 414.8 614 42.8
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.0e-112 410.2 622 43.7
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.3e-110 404.8 621 42.7
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.7e-110 404.4 618 43.4
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 2.2e-110 404.1 618 43.2
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.1e-109 401.7 506 47.4
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 9.1e-109 398.7 637 42.2
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.9e-107 393.7 635 39.8
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.9e-106 391.0 549 44.6
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 4.2e-106 389.8 611 41.7
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.7e-105 387.1 415 54.5
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.6e-105 386.7 396 53.5
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.7e-102 377.9 622 40.5
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 3.5e-100 370.2 553 43.6
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.5e-95 354.8 613 40.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 1.1e-93 348.6 641 40.2
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 3.9e-91 340.1 549 40.6
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.6e-84 318.2 507 42.8
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.0e-84 317.8 394 49.0
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.0e-83 315.5 314 55.7
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 3.0e-83 313.9 598 39.5
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.7e-81 306.6 251 62.9
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.1e-80 305.4 353 50.1
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.4e-77 293.1 381 47.8
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 4.4e-71 273.5 392 45.7
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.6e-66 256.5 432 36.1
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 5.8e-63 246.5 383 41.5
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.9e-61 241.5 666 31.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 5.1e-59 233.4 239 52.3
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 4.3e-58 230.3 247 51.4
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.3e-56 223.4 466 34.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 9.0e-56 222.6 508 35.2
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 2.0e-55 221.5 474 33.3
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 4.4e-55 220.3 246 51.2
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.7e-51 208.4 316 43.0
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 8.7e-51 206.1 577 29.3
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.5e-50 205.3 205 53.2
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.4e-48 198.7 393 37.4
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.9e-42 178.3 241 46.5
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.1e-40 171.0 177 54.2
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.9e-38 163.7 229 44.1
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.2e-36 159.1 247 43.7
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.5e-29 134.8 356 32.0
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 9.3e-29 132.9 221 42.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.3e-27 129.0 132 52.3
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.3e-27 128.3 95 71.6
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.2e-22 111.7 269 33.1
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.8e-22 110.9 253 36.0
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 6.5e-22 110.2 236 36.9
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-21 109.4 247 34.8
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-21 109.0 260 33.8
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 9.4e-21 106.3 178 39.9
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.7e-17 95.5 266 32.0
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.0e-11 76.3 82 47.6
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 6.7e-11 73.6 92 50.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.3e-10 71.2 179 32.4
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 2.8e-09 68.2 96 38.5
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 8.2e-09 66.6 205 31.7
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.4e-08 65.1 111 40.5
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 7.0e-08 63.5 92 44.6


User provided reference genes

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