Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.1e-129 465.7 230 100.0
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.1e-29 134.4 65 93.8
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-27 127.9 77 79.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.3e-27 127.5 84 75.0
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.3e-27 126.7 80 77.5
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.9e-27 125.9 78 78.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.1e-26 124.4 78 78.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 4.3e-26 122.5 80 73.8
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 5.6e-26 122.1 68 82.4
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 7.3e-26 121.7 79 73.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 7.3e-26 121.7 78 76.9
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 9.6e-26 121.3 77 75.3
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.6e-25 120.6 78 76.9
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 2.1e-25 120.2 80 72.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.8e-25 119.8 78 74.4
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 3.6e-25 119.4 76 75.0
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 4.8e-25 119.0 77 74.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.8e-25 119.0 77 74.0
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.8e-25 119.0 77 74.0
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.2e-25 118.6 76 76.3
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.1e-24 117.9 77 74.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.4e-24 117.5 79 68.4
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.4e-24 116.7 72 73.6
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 2.4e-24 116.7 76 72.4
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 3.1e-24 116.3 81 71.6
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 3.1e-24 116.3 72 77.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.1e-24 116.3 77 70.1
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.0e-24 115.9 80 67.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.0e-24 115.9 80 66.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 5.3e-24 115.5 80 65.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 6.9e-24 115.2 79 72.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 9.0e-24 114.8 77 70.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 9.0e-24 114.8 111 54.1
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.2e-23 114.4 78 70.5
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.2e-23 114.4 71 73.2
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.2e-23 114.4 71 73.2
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.2e-23 114.4 78 71.8
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.5e-23 114.0 78 70.5
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.5e-23 114.0 78 71.8
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.5e-23 114.0 77 71.4
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 2.0e-23 113.6 76 69.7
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.0e-23 113.6 73 74.0
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.0e-23 113.6 77 68.8
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.0e-23 113.6 80 65.0
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.0e-23 113.6 76 71.1
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.6e-23 113.2 68 75.0
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 3.4e-23 112.8 78 66.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.4e-23 112.5 77 68.8
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 4.4e-23 112.5 77 70.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 4.4e-23 112.5 78 70.5
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 5.8e-23 112.1 72 75.0
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.8e-23 112.1 72 73.6
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 7.6e-23 111.7 73 72.6
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 7.6e-23 111.7 81 64.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 7.6e-23 111.7 72 76.4
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 7.6e-23 111.7 72 76.4
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 9.9e-23 111.3 77 67.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.9e-23 111.3 80 63.8
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 9.9e-23 111.3 80 63.8
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.7e-22 110.5 67 76.1
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.7e-22 110.5 63 76.2
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 2.2e-22 110.2 74 70.3
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.9e-22 109.8 68 72.1
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 2.9e-22 109.8 68 72.1
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.9e-22 109.8 73 71.2
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.9e-22 109.8 67 74.6
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 3.8e-22 109.4 72 69.4
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.8e-22 109.4 76 72.4
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.8e-22 109.4 76 72.4
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 3.8e-22 109.4 76 72.4
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 4.9e-22 109.0 76 69.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 8.4e-22 108.2 81 63.0
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 8.4e-22 108.2 83 63.9
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.1e-21 107.8 116 50.9
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.4e-21 107.5 79 65.8
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.9e-21 107.1 78 69.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.9e-21 107.1 67 71.6
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.4e-21 106.7 80 61.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 2.4e-21 106.7 67 71.6
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.4e-21 106.7 75 69.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 3.2e-21 106.3 63 71.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.2e-21 105.9 72 69.4
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.2e-21 105.9 72 69.4
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 4.2e-21 105.9 107 55.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 4.2e-21 105.9 107 55.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 7.1e-21 105.1 72 68.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 7.1e-21 105.1 107 55.1
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 7.1e-21 105.1 107 55.1
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 9.3e-21 104.8 76 61.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 9.3e-21 104.8 72 68.1
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 9.3e-21 104.8 72 68.1
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 9.3e-21 104.8 72 68.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 9.3e-21 104.8 63 69.8
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 9.3e-21 104.8 79 63.3
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.6e-20 104.0 70 68.6
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.1e-20 103.6 72 66.7
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-20 103.6 79 62.0
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-20 103.6 81 60.5
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.1e-20 103.6 70 68.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 2.7e-20 103.2 60 75.0
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.7e-20 103.2 72 66.7
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.7e-20 103.2 72 66.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.7e-20 103.2 63 71.4
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.7e-20 103.2 65 70.8
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.7e-20 103.2 80 60.0
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 3.5e-20 102.8 75 64.0
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.5e-20 102.8 62 72.6
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 4.6e-20 102.4 70 67.1
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 4.6e-20 102.4 63 68.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 6.0e-20 102.1 72 66.7
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 7.8e-20 101.7 76 63.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.3e-19 100.9 77 61.0
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-19 100.9 77 61.0
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.3e-19 100.9 77 61.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.3e-19 100.9 67 68.7
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 5.1e-19 99.0 61 70.5
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 5.1e-19 99.0 61 70.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.5e-18 97.4 69 59.4
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.5e-18 96.7 58 70.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.3e-18 95.9 58 69.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 4.3e-18 95.9 106 48.1
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.8e-17 93.2 78 59.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.6e-17 92.8 106 48.1
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 8.1e-17 91.7 64 59.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.3e-14 84.3 55 67.3
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-14 83.6 80 50.0
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 8.4e-14 81.6 81 51.9
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 5.4e-13 79.0 82 45.1
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.0e-11 74.7 57 59.6
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.0e-11 73.2 47 68.1
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 2.0e-07 60.5 47 61.7
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 7.6e-07 58.5 83 36.1
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.3e-06 57.8 42 61.9
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 4.9e-06 55.8 36 72.2


User provided reference genes

Program Settings