Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 0.0e+00 1329.3 660 100.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 0.0e+00 1159.4 650 87.1
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 2.7e-291 1005.0 654 74.6
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 9.0e-287 989.9 948 58.0
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 2.3e-282 975.3 654 71.7
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 3.9e-282 974.5 654 71.3
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 3.9e-282 974.5 653 72.3
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 1.1e-281 973.0 658 71.7
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 9.7e-281 969.9 655 71.9
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.3e-280 969.5 654 71.3
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.3e-280 969.5 654 70.6
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.5e-278 962.6 679 68.8
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 1.5e-278 962.6 653 71.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 2.0e-278 962.2 656 70.6
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 7.2e-276 953.7 655 70.4
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.4e-274 949.5 688 68.2
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 3.0e-274 948.3 654 70.3
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 2.6e-273 945.3 655 69.0
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 7.4e-273 943.7 653 69.1
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.2e-272 942.2 717 64.4
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.2e-269 932.2 650 68.5
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 6.5e-269 930.6 654 67.1
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 8.5e-269 930.2 654 69.0
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 8.5e-269 930.2 654 69.1
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.6e-267 926.0 650 67.5
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.1e-267 925.6 654 67.9
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.7e-267 925.2 654 68.8
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 4.7e-267 924.5 654 69.0
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 6.1e-267 924.1 654 68.0
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 8.0e-267 923.7 688 65.6
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 5.7e-265 917.5 653 67.7
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.2e-264 915.6 650 67.2
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 3.7e-264 914.8 651 67.7
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 8.2e-264 913.7 651 67.1
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 8.2e-264 913.7 654 67.3
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.1e-263 913.3 700 65.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 7.0e-263 910.6 657 66.7
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 7.0e-263 910.6 652 67.2
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 5.9e-262 907.5 651 67.1
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 8.5e-261 903.7 652 67.5
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 8.5e-261 903.7 650 67.4
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.5e-260 902.9 651 65.7
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 2.5e-260 902.1 657 67.1
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 4.2e-260 901.4 654 65.9
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 4.2e-260 901.4 652 67.2
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 7.2e-260 900.6 659 66.2
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 9.4e-260 900.2 654 65.3
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 9.4e-260 900.2 652 66.6
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 3.6e-259 898.3 655 65.8
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 4.7e-259 897.9 653 66.3
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 6.1e-259 897.5 654 65.4
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.8e-258 896.0 652 66.4
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.3e-258 895.6 646 67.2
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 5.2e-258 894.4 655 64.3
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 6.8e-258 894.0 652 66.3
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.5e-257 892.9 679 64.4
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 2.0e-257 892.5 611 69.6
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 3.4e-257 891.7 655 64.7
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 3.4e-257 891.7 651 66.5
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 5.7e-257 891.0 655 64.4
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 9.8e-257 890.2 655 64.7
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.3e-256 889.8 654 64.7
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.7e-256 889.4 655 64.6
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.2e-256 889.0 654 64.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 8.3e-256 887.1 647 66.9
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.1e-255 886.7 653 64.5
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 5.4e-255 884.4 654 65.4
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.4e-255 884.4 672 65.3
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 9.1e-255 883.6 672 65.3
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.5e-254 881.3 654 64.2
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 5.0e-253 877.9 681 63.3
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 4.2e-252 874.8 653 64.9
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 7.2e-252 874.0 658 65.2
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 2.7e-251 872.1 653 64.9
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.0e-250 870.2 654 65.6
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.8e-248 862.1 650 64.5
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 4.9e-248 861.3 652 65.0
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 4.9e-248 861.3 674 62.6
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 5.4e-239 831.2 652 62.4
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 3.3e-236 822.0 655 60.3
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.3e-234 815.8 641 63.3
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 1.3e-232 810.1 652 62.3
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 2.4e-231 805.8 650 61.4
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 2.3e-229 799.3 568 66.9
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 1.9e-228 796.2 662 59.2
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 4.3e-220 768.5 521 69.3
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.6e-219 766.5 631 61.3
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 2.3e-218 762.7 615 62.8
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 4.4e-209 731.9 654 57.2
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 4.4e-209 731.9 494 72.1
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.7e-208 729.9 468 74.1
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 3.8e-208 728.8 653 57.3
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.6e-205 718.0 514 66.3
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 6.2e-203 711.4 576 61.5
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 2.8e-195 686.0 656 55.2
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 9.6e-188 661.0 640 54.1
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 5.5e-175 618.6 428 68.2
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 1.1e-170 604.4 643 47.4
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.2e-166 590.9 663 47.4
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.3e-147 527.7 397 62.7
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 2.2e-139 500.4 517 48.5
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.4e-138 497.7 326 70.9
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.8e-136 489.6 361 64.0
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 8.3e-131 471.9 394 59.1
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 6.4e-115 419.1 288 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.2e-114 416.8 440 48.0
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 3.3e-111 406.8 327 63.3
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.2e-100 371.7 275 66.5
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.9e-99 366.3 302 58.9
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 3.6e-94 350.1 267 62.9
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.6e-92 344.0 236 66.5
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.1e-90 338.6 781 33.3
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.3e-88 331.6 359 51.8
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 6.9e-85 319.3 224 69.2
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 4.9e-83 313.2 233 64.8
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.2e-74 283.5 286 52.4
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 4.5e-68 263.5 430 37.4
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-67 261.9 391 36.6
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.2e-65 255.4 643 32.0
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 3.0e-56 224.2 584 29.1
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 2.5e-42 177.9 286 38.1
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 4.1e-37 160.6 112 73.2
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 2.0e-36 158.3 357 33.6
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.9e-36 156.8 267 37.8
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.0e-35 156.0 137 56.2
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.9e-35 154.5 212 42.0
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.5e-34 151.4 226 39.4
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.2e-31 142.5 103 68.9
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 3.1e-29 134.4 86 73.3
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 3.2e-26 124.4 85 63.5
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.2e-25 122.5 125 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.7e-17 94.0 65 64.6
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 8.0e-17 93.2 135 38.5
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 7.5e-15 86.7 92 44.6
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.8e-14 84.7 205 27.8
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.0e-13 80.1 64 60.9
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.2e-13 79.7 72 55.6
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.5e-12 77.8 44 77.3
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 3.5e-12 77.8 65 58.5
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.8e-12 76.6 53 62.3
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.0e-11 76.3 46 71.7
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-11 75.9 46 71.7
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 5.0e-11 73.9 78 48.7
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 2.8e-09 68.2 236 30.9
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 2.3e-08 65.1 68 47.1
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 6.8e-08 63.5 46 63.0
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 9.8e-07 59.7 123 36.6


User provided reference genes

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