Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 5.9e-62 240.7 126 100.0
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 3.7e-56 221.5 123 91.9
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.9e-53 211.8 114 93.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 5.6e-52 207.6 120 85.8
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 5.6e-52 207.6 120 85.0
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 9.5e-52 206.8 120 84.2
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.2e-51 206.5 120 84.2
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.2e-51 206.5 124 84.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.1e-51 205.7 123 82.1
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.1e-51 205.7 120 83.3
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 2.8e-51 205.3 123 82.9
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.8e-51 205.3 120 82.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.8e-51 205.3 120 84.2
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.6e-51 204.9 120 84.2
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 3.6e-51 204.9 120 84.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.6e-51 204.9 123 81.3
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 4.7e-51 204.5 122 82.8
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 6.2e-51 204.1 119 84.9
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 8.0e-51 203.8 118 84.7
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 8.0e-51 203.8 123 82.1
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 8.0e-51 203.8 122 81.1
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.4e-50 203.0 120 82.5
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.4e-50 203.0 120 83.3
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.8e-50 202.6 120 82.5
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.8e-50 202.6 120 82.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.8e-50 202.6 120 83.3
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.1e-50 201.8 120 81.7
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 4.0e-50 201.4 120 83.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.2e-50 201.1 124 81.5
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 5.2e-50 201.1 119 81.5
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 6.8e-50 200.7 124 80.6
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 8.9e-50 200.3 120 82.5
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.2e-49 199.9 120 80.8
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.2e-49 199.9 122 80.3
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.5e-49 199.5 120 83.3
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-49 199.5 124 81.5
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.6e-49 198.7 117 83.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.6e-49 198.7 117 83.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.6e-49 198.7 117 83.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 2.6e-49 198.7 120 79.2
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.6e-49 198.7 119 82.4
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.6e-49 198.7 124 80.6
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 2.6e-49 198.7 121 81.0
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 3.4e-49 198.4 117 82.9
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 3.4e-49 198.4 117 82.9
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.4e-49 198.4 112 91.1
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.4e-49 198.0 123 77.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.4e-49 198.0 117 82.1
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 4.4e-49 198.0 120 81.7
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.5e-49 197.2 116 84.5
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 7.5e-49 197.2 122 77.9
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 9.8e-49 196.8 117 81.2
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.3e-48 196.4 127 79.5
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.7e-48 196.1 122 78.7
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.7e-48 196.1 119 80.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 2.2e-48 195.7 117 82.1
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-48 195.7 122 77.9
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.9e-48 195.3 116 82.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.9e-48 195.3 120 78.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 124 79.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 3.7e-48 194.9 122 78.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 4.9e-48 194.5 114 85.1
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.9e-48 194.5 120 78.3
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.4e-48 194.1 120 78.3
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 6.4e-48 194.1 120 78.3
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 8.3e-48 193.7 118 78.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.3e-48 193.7 122 77.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.3e-48 193.7 125 79.2
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.1e-47 193.4 122 77.9
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 3.2e-47 191.8 120 80.0
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 4.1e-47 191.4 123 77.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 5.4e-47 191.0 119 77.3
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 5.4e-47 191.0 119 77.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 5.4e-47 191.0 117 80.3
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.0e-47 190.7 124 77.4
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.2e-46 189.9 118 76.3
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-46 189.5 99 100.0
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.6e-46 189.5 122 75.4
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.7e-46 188.7 122 73.0
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 3.5e-46 188.3 110 85.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.5e-46 188.3 122 74.6
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.0e-45 186.8 119 75.6
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.7e-45 186.0 110 84.5
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.3e-45 185.7 123 76.4
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.3e-45 185.7 122 75.4
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-45 185.3 123 75.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 3.0e-45 185.3 120 75.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 6.6e-45 184.1 123 75.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.9e-44 182.6 116 75.9
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.5e-44 182.2 120 71.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.5e-44 182.2 120 70.0
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.6e-44 181.0 105 84.8
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 5.6e-44 181.0 120 72.5
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 5.6e-44 181.0 117 76.9
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 9.5e-44 180.3 122 70.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.6e-43 179.5 120 71.7
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.6e-43 179.5 108 83.3
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.1e-43 179.1 122 71.3
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.8e-43 178.7 124 71.8
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 6.2e-43 177.6 120 75.0
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 6.2e-43 177.6 122 70.5
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 8.1e-43 177.2 123 72.4
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 3.1e-42 175.3 117 74.4
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 5.8e-41 171.0 119 71.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.2e-40 169.1 119 71.4
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 3.7e-40 168.3 119 70.6
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 6.4e-40 167.5 110 78.2
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 6.4e-40 167.5 120 70.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 3.2e-39 165.2 116 66.4
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 4.1e-39 164.9 104 75.0
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.1e-38 162.5 120 71.7
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.1e-38 162.5 98 83.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.6e-38 161.4 98 81.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 6.0e-38 161.0 98 80.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 7.8e-38 160.6 120 68.3
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 8.6e-37 157.1 120 66.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.3e-36 155.2 90 82.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 3.3e-36 155.2 98 78.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 3.3e-36 155.2 98 78.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.4e-34 149.8 95 77.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.3e-34 149.1 120 64.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 7.6e-33 144.1 122 60.7
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.2e-32 142.5 86 82.6
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.2e-32 142.5 112 65.2
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 3.7e-32 141.7 118 61.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 4.9e-32 141.4 120 60.8
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 6.0e-30 134.4 106 64.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.3e-29 133.3 86 76.7
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.3e-29 132.5 112 55.4
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-29 132.1 99 65.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.0e-29 132.1 120 60.8
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 8.6e-29 130.6 102 66.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.9e-28 129.4 84 76.2
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 3.3e-28 128.6 82 72.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 5.6e-28 127.9 106 60.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 8.1e-27 124.0 122 57.4
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 8.1e-27 124.0 85 75.3
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 3.1e-26 122.1 89 62.9
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 3.1e-26 122.1 116 56.9
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 5.2e-26 121.3 121 46.3
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.2e-25 120.2 114 50.0
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 2.0e-25 119.4 111 52.3
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 2.9e-24 115.5 112 49.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 4.9e-24 114.8 115 48.7
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.1e-23 113.6 115 52.2
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.9e-23 112.8 119 52.1
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.9e-23 112.8 117 47.0
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.1e-23 110.9 115 48.7
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.2e-22 110.2 126 48.4
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.6e-22 109.8 61 88.5
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.1e-22 109.4 77 77.9
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.7e-22 109.0 129 47.3
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.3e-21 105.9 98 53.1
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 5.8e-17 91.3 58 72.4
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.0e-09 66.2 75 48.0
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.9e-07 59.7 53 45.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.2e-07 58.5 40 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 1.2e-06 57.0 113 39.8
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 1.6e-06 56.6 111 35.1
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 2.7e-06 55.8 111 35.1
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 6.0e-06 54.7 111 31.5


User provided reference genes

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