Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.6e-251 871.7 483 100.0
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 1.7e-173 613.2 467 74.3
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 3.2e-164 582.4 471 69.2
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.5e-145 520.4 471 64.1
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.8e-143 513.5 473 61.3
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 4.5e-134 482.3 473 57.1
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 3.8e-133 479.2 482 56.6
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 8.5e-133 478.0 482 57.1
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.1e-132 477.6 475 57.9
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.5e-132 475.3 473 58.1
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 5.5e-132 475.3 473 58.1
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 7.2e-132 474.9 473 56.9
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 2.1e-131 473.4 471 58.0
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.7e-131 473.0 469 59.1
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 7.9e-131 471.5 472 57.2
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.0e-130 471.1 489 56.2
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.5e-129 467.2 462 59.1
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.8e-128 463.0 468 59.2
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 4.8e-128 462.2 462 56.5
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 8.2e-128 461.5 463 59.6
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 8.2e-128 461.5 468 57.9
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 1.4e-127 460.7 499 53.9
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.8e-127 460.3 482 55.8
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.1e-127 459.1 477 55.6
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 2.6e-126 456.4 479 55.1
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.3e-125 454.1 498 54.6
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 1.7e-125 453.8 470 55.7
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 2.9e-125 453.0 482 55.4
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 6.5e-125 451.8 467 56.3
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 8.5e-125 451.4 479 53.9
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.4e-124 450.7 478 57.7
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.9e-124 450.3 478 55.6
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.5e-124 449.9 479 55.1
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 4.2e-124 449.1 480 55.2
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 4.2e-124 449.1 473 55.6
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 5.5e-124 448.7 490 53.1
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 1.6e-123 447.2 485 54.2
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.7e-123 446.4 488 53.9
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 6.1e-123 445.3 481 53.8
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.8e-122 443.7 481 54.1
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 3.9e-122 442.6 479 53.9
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 8.8e-122 441.4 474 55.1
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.1e-121 441.0 484 53.3
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 4.4e-121 439.1 507 51.3
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 7.4e-121 438.3 472 54.2
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 9.7e-121 438.0 479 53.0
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 3.7e-120 436.0 472 53.6
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 3.7e-120 436.0 486 52.7
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 4.8e-120 435.6 453 56.3
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 6.3e-120 435.3 474 53.6
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 6.3e-120 435.3 489 53.6
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 8.2e-120 434.9 476 52.7
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.1e-119 434.5 469 53.7
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.1e-119 433.0 483 53.2
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 9.1e-119 431.4 479 52.6
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.2e-118 431.0 493 51.7
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.2e-118 431.0 513 51.3
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.0e-117 427.9 482 52.3
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.3e-117 427.6 483 52.8
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.3e-117 427.6 483 52.8
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.7e-117 427.2 475 51.8
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 2.2e-117 426.8 481 54.7
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 2.9e-117 426.4 465 53.8
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 3.8e-117 426.0 383 59.0
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 5.0e-117 425.6 482 53.3
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.1e-116 424.5 497 51.7
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.4e-116 424.1 466 52.6
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.9e-116 423.7 466 52.6
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 2.5e-116 423.3 483 52.6
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.5e-116 423.3 478 51.7
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 3.2e-116 422.9 474 51.9
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 9.4e-116 421.4 490 50.2
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 1.2e-115 421.0 478 52.1
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 3.6e-115 419.5 490 49.8
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 4.7e-115 419.1 463 52.5
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 6.1e-115 418.7 473 51.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 8.0e-115 418.3 475 53.3
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 2.3e-114 416.8 480 52.9
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.9e-114 416.0 469 52.2
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 5.7e-113 412.1 479 50.5
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 7.4e-113 411.8 465 51.8
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 7.4e-113 411.8 489 51.7
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 9.7e-113 411.4 489 51.7
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.3e-112 411.0 479 50.7
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 1.7e-112 410.6 471 51.8
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 6.3e-112 408.7 479 49.3
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 6.3e-112 408.7 470 53.2
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.1e-111 407.9 491 50.1
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 2.4e-111 406.8 490 49.8
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.4e-111 406.8 476 51.1
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 5.3e-111 405.6 472 50.8
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.2e-110 404.4 487 51.3
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 2.0e-110 403.7 436 56.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.8e-103 380.6 412 53.9
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 3.5e-102 376.3 474 49.8
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 8.5e-101 371.7 433 51.3
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 2.1e-99 367.1 461 49.7
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 6.1e-99 365.5 438 52.5
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.3e-98 363.6 471 49.7
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 4.8e-96 355.9 471 47.8
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.1e-95 353.2 425 50.6
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.5e-92 344.4 428 49.8
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 1.7e-85 320.9 407 46.7
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.2e-83 314.7 340 51.8
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 5.4e-79 299.3 499 43.1
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 8.9e-74 282.0 475 39.8
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.3e-72 278.1 404 44.1
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.1e-71 275.0 321 53.0
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 9.5e-68 261.9 472 39.2
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 7.5e-65 252.3 319 50.8
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.1e-63 248.4 183 69.9
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 5.1e-61 239.6 292 51.0
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 5.4e-55 219.5 468 36.3
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 1.6e-54 218.0 292 43.2
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 8.7e-53 212.2 210 55.7
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 9.0e-50 202.2 208 54.8
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 2.0e-49 201.1 213 54.0
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 5.8e-49 199.5 226 50.9
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 2.6e-41 174.1 335 34.6
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 3.4e-41 173.7 325 39.1
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 6.4e-40 169.5 240 44.2
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 7.4e-36 156.0 156 50.0
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.9e-32 144.1 159 54.1
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.9e-23 114.8 137 46.7
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 9.3e-23 112.5 186 41.4
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 3.3e-20 104.0 94 53.2
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 9.7e-20 102.4 240 30.4
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.3e-19 102.1 111 51.4
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 6.5e-16 89.7 188 35.6
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 9.7e-12 75.9 72 56.9
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.9e-07 61.6 206 28.2
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 3.2e-07 60.8 208 28.8
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.2e-07 60.5 219 26.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 5.5e-07 60.1 213 28.6
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 9.4e-07 59.3 142 29.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 9.4e-07 59.3 201 26.9
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.2e-06 58.9 178 27.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.1e-06 58.2 206 27.2
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.1e-06 58.2 134 32.1
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.7e-06 57.8 157 29.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 3.6e-06 57.4 139 31.7
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.7e-06 57.0 173 27.2
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.7e-06 57.0 142 30.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.1e-06 56.6 214 26.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 7.9e-06 56.2 200 27.5


User provided reference genes

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