Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.4e-100 369.8 202 100.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.3e-79 300.1 202 84.7
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.3e-79 300.1 199 85.9
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 2.5e-78 295.8 202 83.7
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.7e-74 282.0 205 77.6
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 8.3e-74 280.8 201 76.6
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 3.5e-72 275.4 206 69.4
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 3.5e-72 275.4 208 74.5
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.0e-71 273.9 207 71.0
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.3e-71 273.5 203 68.5
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.9e-71 272.3 202 73.8
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 2.9e-71 272.3 203 71.9
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 3.9e-71 271.9 202 67.8
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 3.9e-71 271.9 201 69.2
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 8.6e-71 270.8 203 68.0
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.5e-70 270.0 201 71.1
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 1.9e-70 269.6 205 71.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.9e-70 269.6 206 68.4
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 5.6e-70 268.1 210 68.6
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 5.6e-70 268.1 204 67.6
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 7.3e-70 267.7 203 70.9
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.3e-70 267.7 202 67.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 9.5e-70 267.3 204 67.6
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.2e-69 266.9 204 67.6
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.2e-69 266.9 204 71.6
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.6e-69 266.5 207 74.9
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-69 266.2 207 68.6
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 2.8e-69 265.8 203 67.0
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.8e-69 265.8 204 69.6
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.6e-69 265.4 205 68.3
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.0e-68 263.8 202 68.3
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.0e-68 263.8 205 73.2
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.0e-68 263.8 197 70.1
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 3.1e-68 262.3 196 68.4
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.1e-68 262.3 203 66.5
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 3.1e-68 262.3 205 68.3
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.1e-68 262.3 207 67.1
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 4.0e-68 261.9 201 73.6
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 6.8e-68 261.2 202 67.3
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 1.2e-67 260.4 202 71.3
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.2e-67 260.4 211 70.6
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.5e-67 260.0 202 66.3
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.5e-67 260.0 203 68.0
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.0e-67 259.6 205 74.1
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 2.6e-67 259.2 204 69.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 3.4e-67 258.8 205 66.8
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 3.4e-67 258.8 207 66.7
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 5.8e-67 258.1 203 71.4
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 7.5e-67 257.7 199 66.8
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 9.8e-67 257.3 187 73.3
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 9.8e-67 257.3 187 77.0
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.3e-66 256.9 199 66.3
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.7e-66 256.5 195 75.4
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.7e-66 256.5 205 67.8
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.2e-66 256.1 205 67.3
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 6.4e-66 254.6 206 65.5
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 8.3e-66 254.2 202 71.3
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.1e-65 253.8 201 65.7
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.4e-65 253.4 201 66.2
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.4e-65 252.7 199 71.4
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 3.2e-65 252.3 199 65.8
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 4.1e-65 251.9 206 64.1
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 4.1e-65 251.9 206 73.3
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 7.0e-65 251.1 203 69.5
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 7.0e-65 251.1 203 70.0
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.6e-64 250.0 199 72.9
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.0e-64 249.6 204 67.2
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 2.7e-64 249.2 202 66.8
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 2.7e-64 249.2 202 66.8
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.5e-64 248.8 200 75.0
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 7.8e-64 247.7 199 65.3
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.0e-63 247.3 213 67.6
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.7e-63 246.5 196 64.8
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 1.7e-63 246.5 199 71.4
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 2.3e-63 246.1 198 70.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 6.6e-63 244.6 206 69.4
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 8.6e-63 244.2 199 70.4
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 8.6e-63 244.2 180 76.7
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 8.6e-63 244.2 195 74.4
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.1e-62 243.8 203 70.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.5e-62 243.4 198 70.2
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 2.5e-62 242.7 199 70.9
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 7.3e-62 241.1 194 74.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.6e-61 240.0 198 69.7
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.6e-61 240.0 201 63.7
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 2.1e-61 239.6 208 66.3
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.6e-61 238.8 210 61.4
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 4.7e-61 238.4 198 68.7
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 4.7e-61 238.4 186 72.6
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 8.0e-61 237.7 206 70.4
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 8.0e-61 237.7 204 69.1
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.1e-60 237.3 190 71.1
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.0e-60 235.3 199 65.8
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 8.9e-60 234.2 194 63.4
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 5.8e-59 231.5 145 76.6
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.8e-59 231.5 145 76.6
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.8e-59 231.5 145 76.6
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.4e-57 226.1 145 75.2
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 5.4e-57 224.9 119 85.7
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.2e-56 223.8 206 65.5
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 3.5e-56 222.2 144 72.9
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 3.9e-55 218.8 202 67.3
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.6e-55 217.6 131 79.4
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.6e-53 213.4 210 60.0
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.1e-52 210.7 111 85.6
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.8e-52 209.9 126 76.2
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.3e-52 209.5 151 74.2
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 3.1e-52 209.1 191 65.4
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 8.9e-52 207.6 190 65.8
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.2e-51 207.2 210 57.1
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.6e-51 206.1 132 74.2
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 8.3e-50 201.1 116 77.6
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 5.4e-49 198.4 201 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 5.6e-46 188.3 116 75.0
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 1.4e-44 183.7 159 71.1
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.4e-44 183.7 107 80.4
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 4.0e-44 182.2 155 60.6
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 1.4e-41 173.7 100 80.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.4e-41 172.9 91 86.8
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.2e-35 154.1 211 47.4
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 5.6e-30 135.2 82 74.4
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.3e-29 134.0 121 71.9
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 4.0e-28 129.0 101 56.4
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.9e-28 128.3 205 49.8
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 3.4e-27 125.9 122 59.0
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.6e-21 107.1 106 47.2
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 8.1e-21 104.8 59 79.7
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 3.1e-20 102.8 93 50.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-16 90.9 83 60.2
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-16 90.1 57 71.9
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 5.7e-14 82.0 113 40.7
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.2e-10 70.1 85 45.9
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 8.4e-10 68.2 38 78.9
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.9e-06 57.0 82 61.0
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 7.4e-06 55.1 39 61.5
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.4e-06 55.1 106 41.5


User provided reference genes

Program Settings