Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.8e-62 242.3 114 100.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.9e-60 235.0 114 96.5
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 7.3e-59 230.3 114 93.9
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.0e-57 226.5 114 91.2
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.8e-57 225.7 114 90.4
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.3e-57 225.3 114 90.4
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.0e-57 224.9 114 88.6
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.0e-57 224.9 114 90.4
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.8e-57 223.8 114 89.5
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 6.8e-57 223.8 114 90.4
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 8.9e-57 223.4 113 88.5
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.5e-56 222.6 114 89.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.6e-56 221.9 114 89.5
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.6e-56 221.9 114 88.6
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 3.4e-56 221.5 114 88.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 3.4e-56 221.5 114 88.6
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 3.4e-56 221.5 114 88.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 3.4e-56 221.5 114 88.6
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.4e-56 221.5 114 88.6
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 3.4e-56 221.5 114 89.5
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.4e-56 221.5 115 90.4
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 4.4e-56 221.1 114 87.7
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.4e-56 221.1 115 89.6
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 5.7e-56 220.7 114 87.7
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 5.7e-56 220.7 114 87.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 5.7e-56 220.7 114 88.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 5.7e-56 220.7 114 87.7
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 7.5e-56 220.3 114 87.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 7.5e-56 220.3 114 90.4
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 9.8e-56 219.9 114 87.7
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 9.8e-56 219.9 113 87.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 9.8e-56 219.9 113 87.6
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-55 219.5 114 87.7
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.3e-55 219.5 114 88.6
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.2e-55 218.8 113 86.7
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.2e-55 218.8 114 87.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 4.9e-55 217.6 114 87.7
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 4.9e-55 217.6 114 86.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 4.9e-55 217.6 114 86.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 6.4e-55 217.2 114 86.0
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 6.4e-55 217.2 114 86.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 6.4e-55 217.2 114 86.0
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 6.4e-55 217.2 114 89.5
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 6.4e-55 217.2 114 89.5
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.4e-54 216.1 113 86.7
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.8e-54 215.7 114 86.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.8e-54 215.7 114 87.7
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.4e-54 215.3 114 86.8
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.4e-54 215.3 114 87.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 2.4e-54 215.3 114 86.8
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.4e-54 215.3 113 88.5
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 3.2e-54 214.9 114 86.8
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 3.2e-54 214.9 114 87.7
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 4.1e-54 214.5 114 86.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 4.1e-54 214.5 114 86.8
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 5.4e-54 214.2 114 86.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 5.4e-54 214.2 114 85.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 5.4e-54 214.2 114 86.0
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 5.4e-54 214.2 114 85.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 7.0e-54 213.8 112 86.6
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 7.0e-54 213.8 114 87.7
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 7.0e-54 213.8 114 86.0
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.0e-54 213.8 114 85.1
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.0e-54 213.8 114 86.8
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 9.2e-54 213.4 114 86.0
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.2e-53 213.0 114 86.0
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.2e-53 213.0 114 86.0
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.2e-53 213.0 113 85.8
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-53 212.6 115 86.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.6e-53 212.6 114 85.1
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.7e-53 211.8 114 85.1
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 4.6e-53 211.1 112 85.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.6e-53 211.1 114 85.1
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.9e-53 210.7 114 84.2
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.9e-53 210.7 114 85.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.9e-53 210.7 114 85.1
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 7.8e-53 210.3 128 78.1
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.8e-53 210.3 112 84.8
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.0e-52 209.9 114 85.1
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.3e-52 209.5 114 86.0
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-52 209.5 114 86.0
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.7e-52 209.1 114 84.2
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.0e-52 208.4 114 84.2
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.9e-52 208.0 114 85.1
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.9e-52 208.0 114 85.1
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.9e-52 208.0 114 85.1
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 5.0e-52 207.6 113 82.3
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.0e-52 207.6 113 85.0
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.0e-52 207.6 113 85.0
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 1.5e-51 206.1 114 83.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 2.5e-51 205.3 114 85.1
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.5e-51 205.3 115 82.6
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 4.3e-51 204.5 115 85.2
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 5.6e-51 204.1 114 83.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 7.3e-51 203.8 114 82.5
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.2e-50 203.0 114 81.6
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 2.1e-50 202.2 114 81.6
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 4.7e-50 201.1 114 79.8
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.0e-49 199.9 114 77.2
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 4.0e-49 198.0 114 78.9
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.0e-48 195.7 100 90.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.6e-48 195.3 114 81.6
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.4e-48 194.9 112 80.4
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 3.4e-48 194.9 114 80.7
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.3e-47 193.0 94 92.6
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.7e-47 192.6 114 75.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.9e-47 191.8 114 78.1
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 4.9e-47 191.0 112 76.8
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.1e-46 189.9 93 89.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 5.4e-46 187.6 94 88.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.6e-45 186.0 95 90.5
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.0e-45 185.7 114 71.9
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.3e-44 183.0 95 88.4
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.3e-44 183.0 95 88.4
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.7e-44 182.6 95 86.3
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 2.3e-44 182.2 95 88.4
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 3.0e-44 181.8 95 87.4
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 5.0e-44 181.0 100 83.0
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 5.0e-44 181.0 95 89.5
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.0e-44 181.0 95 85.3
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 5.0e-44 181.0 95 88.4
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 6.6e-44 180.6 95 87.4
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 1.1e-43 179.9 100 82.0
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-43 179.1 95 85.3
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 3.6e-42 174.9 95 85.3
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.8e-41 172.6 95 84.2
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 3.4e-40 168.3 100 79.0
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 7.1e-38 160.6 122 61.5
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.7e-37 158.7 127 63.8
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.6e-35 151.0 114 66.7
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.6e-35 151.0 112 66.1
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.2e-34 149.8 75 85.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 5.2e-33 144.4 129 57.4
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 5.2e-33 144.4 102 59.8
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 3.8e-31 138.3 114 62.3
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 7.1e-30 134.0 104 58.7
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 7.8e-29 130.6 68 86.8
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.3e-27 124.8 79 73.4
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.8e-26 122.1 63 88.9
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.1e-25 120.2 111 55.9
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.0e-25 118.2 63 84.1
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.3e-23 113.2 73 72.6
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.2e-23 112.5 67 77.6
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 6.4e-23 110.9 90 54.4
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-22 110.2 66 75.8
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.4e-22 109.0 73 68.5
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.6e-21 106.3 75 70.7
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.9e-19 99.4 63 69.8
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 4.8e-18 94.7 63 71.4
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 8.1e-18 94.0 71 62.0
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.2e-16 90.1 78 53.8
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 2.0e-16 89.4 103 42.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.8e-16 87.8 43 90.7
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 8.4e-15 84.0 60 68.3
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 3.8e-07 58.5 95 36.8


User provided reference genes

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