Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 0.0e+00 1184.9 589 100.0
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.1e-278 963.0 589 80.8
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.3e-271 939.5 589 78.1
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 8.1e-263 910.2 592 77.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 6.5e-228 794.3 596 66.8
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 4.2e-227 791.6 595 67.2
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 7.4e-224 780.8 596 66.1
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 9.1e-222 773.9 594 65.3
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.5e-219 766.5 598 65.7
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.7e-218 761.5 670 59.9
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.7e-215 753.1 596 64.8
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 4.8e-215 751.5 667 57.7
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.1e-214 748.8 595 64.4
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 3.5e-213 745.3 601 62.4
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 3.5e-213 745.3 596 63.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 1.3e-212 743.4 599 62.1
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 6.5e-212 741.1 599 62.6
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 8.5e-212 740.7 597 61.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.5e-211 739.2 596 63.4
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 9.4e-211 737.3 593 62.1
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.6e-210 735.3 597 61.1
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.4e-209 733.4 597 60.8
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.8e-209 733.0 597 61.8
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 5.2e-209 731.5 594 61.4
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 6.8e-209 731.1 599 61.4
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.2e-208 730.3 593 62.7
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.2e-208 730.3 629 60.9
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.4e-208 728.8 590 60.8
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.4e-208 728.8 597 62.5
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 9.8e-208 727.2 597 61.3
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 9.8e-208 727.2 594 61.4
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.3e-207 726.9 595 62.7
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 3.7e-207 725.3 597 62.0
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 4.1e-206 721.8 596 60.9
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 5.4e-206 721.5 622 60.0
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.2e-205 720.3 591 61.8
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 2.0e-205 719.5 593 61.6
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.7e-205 719.2 595 60.2
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 7.7e-205 717.6 609 59.6
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 2.3e-204 716.1 594 61.3
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 8.6e-204 714.1 595 61.2
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.9e-203 713.0 595 61.0
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 2.8e-202 709.1 592 61.7
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 3.6e-202 708.8 631 59.0
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 6.1e-202 708.0 598 59.5
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 1.0e-201 707.2 594 60.1
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 8.9e-201 704.1 591 60.2
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.6e-200 702.6 597 60.0
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 4.4e-200 701.8 589 61.6
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 5.7e-200 701.4 598 59.5
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 5.7e-200 701.4 591 60.7
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 5.7e-200 701.4 596 60.9
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 9.8e-200 700.7 598 59.7
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.3e-199 700.3 598 60.0
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.2e-199 699.5 591 60.6
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.9e-199 698.4 591 60.4
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.1e-198 697.2 594 59.6
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.1e-198 697.2 596 59.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.4e-198 696.0 594 59.8
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.2e-198 694.1 591 60.2
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 2.7e-197 692.6 600 58.2
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.3e-196 690.3 596 59.9
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 6.6e-196 688.0 597 58.8
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 4.3e-195 685.3 605 58.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 5.6e-195 684.9 609 58.3
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.6e-194 683.3 595 59.2
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 4.7e-194 681.8 595 59.5
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 4.7e-194 681.8 618 56.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 5.2e-193 678.3 595 58.5
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 8.9e-193 677.6 605 56.2
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.2e-192 677.2 605 56.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.5e-192 676.8 595 57.6
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 2.0e-192 676.4 598 58.0
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.9e-191 671.8 531 65.0
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.4e-190 669.5 601 57.6
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.6e-189 666.8 598 57.2
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.7e-189 666.0 596 56.2
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 2.7e-189 666.0 597 58.3
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 2.7e-189 666.0 597 58.3
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.0e-188 664.1 593 57.5
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 3.9e-188 662.1 556 60.4
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.5e-187 660.2 596 58.7
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 3.3e-187 659.1 603 57.4
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 5.6e-187 658.3 602 56.0
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 9.5e-187 657.5 594 57.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 2.1e-186 656.4 598 56.7
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.8e-186 656.0 598 56.5
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 3.6e-186 655.6 597 56.8
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 5.2e-185 651.7 594 57.6
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 8.3e-183 644.4 559 58.1
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 4.1e-182 642.1 595 57.3
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 3.5e-181 639.0 593 55.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 2.3e-180 636.3 597 54.8
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.9e-179 633.3 577 57.0
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 7.3e-179 631.3 596 55.2
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 7.3e-179 631.3 596 55.0
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.2e-173 614.0 504 62.5
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.6e-173 613.6 602 53.8
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.2e-170 601.7 551 57.2
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.3e-167 594.0 604 51.8
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 3.4e-160 569.3 602 52.0
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 3.8e-159 565.8 618 49.5
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 1.7e-156 557.0 603 48.4
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 3.3e-155 552.7 526 55.5
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 3.3e-155 552.7 523 55.1
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 9.6e-155 551.2 526 55.5
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 6.9e-153 545.0 589 49.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.6e-152 541.6 419 67.3
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 4.0e-145 519.2 446 60.3
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.3e-143 514.2 467 57.6
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.9e-143 513.1 550 52.7
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.4e-126 457.6 607 42.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.7e-123 445.7 574 43.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 4.5e-120 436.0 386 57.3
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.7e-115 419.1 599 40.1
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 7.7e-112 408.7 610 38.7
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.1e-109 400.6 280 72.1
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.3e-106 391.3 594 39.4
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.5e-94 349.4 626 37.4
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 9.4e-94 348.6 249 70.3
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 8.0e-93 345.5 413 49.6
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.2e-90 337.4 265 64.2
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.4e-89 334.0 305 54.8
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 3.6e-77 293.5 614 32.1
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.3e-74 285.0 466 41.2
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.6e-69 266.9 250 58.8
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.1e-68 265.4 427 40.7
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 4.4e-59 233.4 280 46.8
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 2.5e-54 217.6 287 45.3
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 8.9e-52 209.1 145 67.6
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 1.5e-51 208.4 167 62.9
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.4e-49 201.8 132 66.7
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 5.3e-44 183.3 566 28.6
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 4.4e-43 180.3 282 39.0
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.8e-37 161.0 134 58.2
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 3.1e-36 157.5 128 62.5
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 3.2e-33 147.5 116 63.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 9.3e-33 146.0 385 31.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 6.0e-32 143.3 95 71.6
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 7.6e-27 126.3 888 22.6
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.2e-26 124.8 143 41.3
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 6.0e-24 116.7 79 62.0
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.4e-22 109.8 84 67.9
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.0e-18 99.4 106 51.9
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.1e-14 85.9 56 67.9
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.8e-13 80.5 89 44.9
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.5e-11 75.5 132 35.6
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 2.0e-11 75.1 68 51.5
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 2.0e-11 75.1 136 36.8
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.4e-11 74.3 66 53.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 5.9e-11 73.6 43 72.1
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 5.9e-11 73.6 66 53.0
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 6.5e-10 70.1 105 39.0
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 2.0e-06 58.5 58 50.0


User provided reference genes

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