Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.3e-71 271.6 134 100.0
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 4.2e-58 228.0 117 94.9
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.7e-57 225.3 126 87.3
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 8.3e-54 213.8 117 91.5
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.0e-51 204.5 132 75.0
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.5e-50 203.0 122 79.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.9e-50 202.6 124 76.6
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.9e-50 202.6 100 99.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.5e-50 202.2 132 75.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 2.5e-50 202.2 126 77.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.2e-50 201.8 132 75.0
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.2e-50 201.8 133 75.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.2e-50 201.4 126 77.8
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.2e-50 201.4 126 77.8
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.5e-50 201.1 132 75.8
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.5e-50 201.1 129 75.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.4e-50 200.3 129 75.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.4e-50 200.3 129 75.2
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.6e-49 199.5 129 74.4
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.6e-49 199.5 128 75.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.1e-49 199.1 124 78.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.1e-49 199.1 124 78.2
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 3.6e-49 198.4 122 77.9
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 3.6e-49 198.4 122 77.9
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 6.1e-49 197.6 128 77.3
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 8.0e-49 197.2 126 75.4
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 8.0e-49 197.2 123 74.8
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.4e-48 196.4 124 75.8
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-48 196.4 130 73.1
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.4e-48 196.4 123 74.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.8e-48 196.1 126 74.6
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.8e-48 196.1 129 73.6
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.3e-48 195.7 132 73.5
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 3.0e-48 195.3 126 76.2
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 4.0e-48 194.9 124 77.4
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.0e-48 194.9 121 78.5
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 5.2e-48 194.5 126 75.4
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 8.8e-48 193.7 123 75.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 8.8e-48 193.7 135 68.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-47 193.0 129 72.9
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.0e-47 192.6 123 73.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.0e-47 192.6 126 75.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.0e-47 192.6 123 74.8
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 2.6e-47 192.2 121 73.6
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 3.4e-47 191.8 129 70.5
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 4.4e-47 191.4 122 76.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 7.5e-47 190.7 135 69.6
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 9.8e-47 190.3 128 72.7
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.8e-47 190.3 119 76.5
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.3e-46 189.9 127 74.0
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.7e-46 189.5 120 75.8
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.2e-46 189.1 131 71.0
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.7e-46 188.3 122 71.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 4.9e-46 188.0 130 69.2
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 6.3e-46 187.6 124 72.6
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.1e-45 186.8 119 75.6
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 3.1e-45 185.3 126 73.8
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.4e-45 184.5 130 69.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 7.0e-45 184.1 128 71.1
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-44 183.3 133 66.9
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.6e-44 183.0 130 67.7
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.0e-44 182.6 118 76.3
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 3.5e-44 181.8 128 68.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 5.9e-44 181.0 126 71.4
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 7.7e-44 180.6 122 69.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 7.7e-44 180.6 129 69.0
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.7e-44 180.6 122 71.3
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.0e-43 180.3 119 71.4
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.0e-43 180.3 128 69.5
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.7e-43 179.5 128 68.8
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 2.3e-43 179.1 121 69.4
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-43 179.1 132 66.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.8e-43 178.3 119 77.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 5.0e-43 177.9 122 68.0
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.0e-43 177.9 128 68.8
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.0e-43 177.9 128 68.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 6.6e-43 177.6 122 72.1
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 6.6e-43 177.6 133 64.7
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.9e-42 176.0 123 67.5
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.9e-42 176.0 120 68.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.2e-42 174.9 119 69.7
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 5.6e-42 174.5 119 67.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 9.5e-42 173.7 123 69.9
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-41 173.3 122 67.2
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 122 68.9
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.6e-41 172.9 119 68.1
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.8e-41 172.2 131 64.1
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 4.7e-41 171.4 130 64.6
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 6.1e-41 171.0 129 67.4
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.4e-40 169.9 127 66.1
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.8e-40 169.5 120 69.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-40 168.7 119 66.4
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 4.0e-40 168.3 120 69.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 4.0e-40 168.3 132 62.1
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 5.2e-40 167.9 139 59.7
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.5e-39 166.4 122 68.0
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 2.0e-39 166.0 120 63.3
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.0e-39 166.0 121 68.6
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.6e-39 165.6 118 68.6
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.4e-39 165.2 119 65.5
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 3.4e-39 165.2 120 65.0
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 3.4e-39 165.2 132 64.4
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 5.7e-39 164.5 128 65.6
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-38 162.9 128 63.3
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-38 162.9 111 71.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.7e-38 162.9 125 63.2
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 2.2e-38 162.5 120 64.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.9e-38 162.2 119 64.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.7e-38 161.8 119 64.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 8.3e-38 160.6 125 60.8
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.1e-37 158.3 108 71.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 5.4e-37 157.9 126 60.3
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 7.0e-37 157.5 125 61.6
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.2e-36 156.8 126 58.7
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.6e-36 156.4 125 63.2
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.0e-36 156.0 125 60.0
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.7e-36 155.6 130 56.9
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.5e-36 155.2 109 70.6
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.5e-36 155.2 134 60.4
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 5.9e-36 154.5 125 63.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.5e-34 149.1 125 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 3.3e-34 148.7 119 59.7
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.3e-34 148.7 125 56.8
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 3.3e-34 148.7 119 57.1
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.6e-34 147.9 131 56.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.6e-34 147.9 131 57.3
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 7.3e-34 147.5 126 57.9
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.2e-33 146.7 121 60.3
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.6e-33 146.4 123 56.9
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.6e-33 146.4 118 61.0
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.6e-33 146.4 118 61.0
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.6e-33 146.4 118 61.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.6e-33 146.4 104 68.3
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.7e-33 144.8 125 55.2
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 8.0e-33 144.1 129 60.5
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 8.0e-33 144.1 116 61.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-32 143.7 122 59.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.0e-32 143.7 120 59.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.4e-32 143.3 131 54.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.1e-32 142.1 120 58.3
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.1e-32 142.1 123 56.1
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.0e-32 141.7 117 59.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.0e-31 139.4 123 56.9
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 2.6e-31 139.0 119 57.1
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.8e-31 137.1 122 56.6
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 9.8e-31 137.1 121 55.4
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.9e-30 135.6 118 55.9
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-30 135.2 118 55.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 3.7e-30 135.2 118 55.9
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.1e-29 133.7 118 55.1
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.1e-29 133.7 121 55.4
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 5.4e-29 131.3 118 54.2
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.0e-28 129.4 118 54.2
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.0e-28 129.4 118 54.2
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-28 129.0 128 53.9
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-26 123.6 119 53.8
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.6e-25 119.8 100 64.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.7e-25 118.2 119 48.7
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.5e-20 102.1 58 75.9
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-18 97.1 65 72.3
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.9e-18 96.3 62 77.4
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 7.3e-18 94.4 63 71.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.2e-17 93.6 65 70.8
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 8.1e-17 90.9 112 41.1
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.1e-17 90.9 58 70.7
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.4e-16 90.1 64 67.2
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.4e-16 90.1 64 67.2
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.2e-16 88.2 82 59.8
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.0e-15 86.3 53 71.7
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-14 82.8 54 70.4
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.2e-14 82.8 62 58.1
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 8.4e-14 80.9 118 41.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-13 80.1 54 68.5
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.0e-11 72.4 51 72.5
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 5.1e-11 71.6 42 76.2
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.1e-10 70.5 59 61.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.2e-09 64.7 69 55.1
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 1.3e-06 57.0 40 62.5


User provided reference genes

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