Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.6e-100 369.4 187 100.0
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.3e-94 349.0 184 94.6
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 6.5e-89 330.9 187 86.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 4.2e-88 328.2 187 85.0
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 7.9e-87 323.9 187 84.5
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.0e-86 323.6 185 85.4
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 4.3e-77 291.6 185 75.7
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 3.2e-72 275.4 185 71.4
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.2e-72 275.0 184 71.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 7.2e-72 274.2 184 73.9
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.6e-71 271.9 185 71.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 2.8e-68 262.3 187 67.9
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 6.3e-68 261.2 187 67.9
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.4e-67 260.0 185 69.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.4e-67 260.0 188 69.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.1e-67 258.8 187 67.4
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.1e-67 258.8 187 67.4
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 5.3e-67 258.1 186 68.8
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 7.0e-67 257.7 187 67.4
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.0e-66 256.1 186 67.7
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 3.5e-66 255.4 186 68.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 65.2
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 9.4e-64 247.3 184 67.4
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.7e-63 245.7 184 65.8
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 3.6e-63 245.4 183 64.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 4.7e-63 245.0 183 63.9
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 8.0e-63 244.2 182 68.7
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.8e-62 243.0 183 67.8
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.8e-62 243.0 184 65.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.0e-62 242.3 182 64.8
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.0e-62 242.3 185 63.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 8.8e-62 240.7 183 66.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.1e-61 240.4 182 64.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.1e-61 240.4 182 63.7
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.1e-61 240.4 182 63.7
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.1e-61 240.4 182 64.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.0e-61 239.6 184 64.1
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.0e-61 239.6 186 65.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.6e-61 239.2 182 63.2
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 2.6e-61 239.2 184 64.1
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 2.6e-61 239.2 182 63.2
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.6e-61 239.2 184 64.7
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.4e-61 238.4 186 62.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 5.7e-61 238.0 184 64.1
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 5.7e-61 238.0 182 62.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 9.7e-61 237.3 182 63.2
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 9.7e-61 237.3 183 65.0
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.7e-60 236.5 183 62.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.7e-60 236.5 186 64.5
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 62.6
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 3.7e-60 235.3 182 62.6
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 3.7e-60 235.3 182 64.3
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.8e-60 235.0 184 64.1
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 6.3e-60 234.6 182 61.5
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 6.3e-60 234.6 183 61.7
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 6.3e-60 234.6 182 64.3
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.2e-60 234.2 184 63.0
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.1e-59 233.8 184 63.0
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.4e-59 232.6 182 61.5
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.4e-59 232.6 182 61.5
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.1e-59 232.3 184 64.1
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.1e-59 232.3 182 63.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 3.1e-59 232.3 182 63.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 3.1e-59 232.3 182 63.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 4.1e-59 231.9 182 61.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 4.1e-59 231.9 182 61.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.1e-59 231.9 185 62.2
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.3e-59 231.5 184 63.6
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 9.1e-59 230.7 182 60.4
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.2e-58 230.3 182 61.5
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.2e-58 230.3 182 61.5
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 1.2e-58 230.3 186 59.7
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.6e-58 229.9 182 64.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.0e-58 229.6 189 61.9
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 3.5e-58 228.8 182 60.4
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 5.9e-58 228.0 182 61.5
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 7.7e-58 227.6 182 59.3
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.3e-57 226.9 182 62.1
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.0e-57 224.9 182 61.0
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 8.5e-57 224.2 169 62.7
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 8.5e-57 224.2 182 60.4
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 4.2e-56 221.9 182 59.3
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 7.2e-56 221.1 182 61.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.2e-55 220.3 184 60.3
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 2.1e-55 219.5 182 61.0
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.1e-55 219.5 181 58.0
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 2.7e-55 219.2 184 60.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 6.1e-55 218.0 150 70.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 8.0e-55 217.6 180 60.6
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.0e-54 217.2 182 59.3
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.0e-54 217.2 182 60.4
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.4e-54 216.9 148 70.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.8e-54 216.5 178 61.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.8e-54 216.5 182 60.4
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.3e-54 216.1 182 58.8
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 2.3e-54 216.1 182 57.1
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 4.0e-54 215.3 182 60.4
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 8.8e-54 214.2 179 59.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.0e-53 213.0 175 62.3
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.7e-53 211.5 204 56.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.7e-53 211.5 167 63.5
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 7.5e-53 211.1 180 58.3
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 9.8e-53 210.7 185 55.7
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 9.8e-53 210.7 184 60.3
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 6.3e-52 208.0 181 57.5
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 6.3e-52 208.0 184 56.5
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.1e-51 207.2 180 57.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.4e-51 206.8 184 56.0
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.6e-50 203.4 184 56.0
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 2.0e-50 203.0 187 54.0
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 3.5e-50 202.2 204 52.9
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.5e-50 202.2 185 57.8
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 4.5e-50 201.8 149 67.8
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 5.5e-48 194.9 165 59.4
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 8.0e-47 191.0 165 58.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.6e-45 186.0 147 59.9
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 3.1e-43 179.1 196 53.6
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.2e-42 177.2 182 48.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 4.5e-42 175.3 183 51.9
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.6e-41 171.4 183 48.1
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.5e-40 170.2 183 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.5e-40 167.5 183 48.6
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 8.0e-39 164.5 183 51.9
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-36 156.8 183 44.8
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.1e-35 154.1 151 55.0
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.4e-35 152.9 185 40.0
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.4e-35 152.9 147 53.7
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.7e-28 130.2 112 55.4
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.9e-27 126.7 103 59.2
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.4e-27 126.3 100 62.0
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 3.9e-25 119.0 65 81.5
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 6.6e-25 118.2 119 52.9
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 3.6e-23 112.5 72 69.4
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 2.0e-21 106.7 159 40.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.9e-20 102.8 104 48.1
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.2e-18 97.4 167 31.7
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 6.0e-18 95.1 80 58.8
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 5.6e-16 88.6 186 30.1
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 6.2e-15 85.1 70 55.7
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.1e-14 84.3 80 58.8
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 9.9e-13 77.8 174 27.0


User provided reference genes

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