Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 9.4e-246 853.2 439 100.0
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.7e-146 523.5 443 61.9
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 7.9e-144 514.6 436 59.4
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.2e-137 492.7 431 60.3
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 7.7e-131 471.5 432 55.6
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 7.7e-123 444.9 431 53.4
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 9.4e-121 438.0 441 51.5
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 2.1e-120 436.8 441 53.1
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.1e-116 424.5 439 49.2
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.3e-116 422.2 450 50.4
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.7e-115 419.9 434 49.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.5e-115 419.1 448 50.2
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.7e-114 417.2 453 48.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 2.2e-114 416.8 433 49.0
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 9.4e-113 411.4 450 49.6
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.2e-112 411.0 442 48.4
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 8.0e-112 408.3 451 48.3
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.0e-111 407.9 454 46.7
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 1.4e-111 407.5 458 47.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.2e-110 404.4 439 47.4
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 6.3e-109 398.7 438 45.7
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.1e-108 397.9 434 46.5
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.8e-108 397.1 440 46.8
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.1e-108 396.0 428 46.7
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 9.1e-108 394.8 433 48.5
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 9.1e-108 394.8 434 47.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.2e-107 394.4 442 48.0
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 2.0e-107 393.7 434 47.0
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.5e-107 392.9 456 46.9
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 4.5e-107 392.5 444 47.3
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 4.5e-107 392.5 429 47.8
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 4.5e-107 392.5 439 47.2
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 4.5e-107 392.5 445 48.8
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 1.7e-106 390.6 426 49.8
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.7e-106 390.6 419 47.5
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.3e-106 390.2 443 47.2
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.9e-106 389.8 439 49.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 2.9e-106 389.8 431 47.6
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 3.8e-106 389.4 438 46.8
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 6.6e-106 388.7 437 46.5
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 6.6e-106 388.7 427 46.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.5e-105 386.7 452 46.7
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.5e-105 385.6 427 45.9
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 7.2e-105 385.2 431 47.1
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-104 384.0 427 45.9
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.0e-103 381.3 447 45.4
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.4e-103 380.9 463 44.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-103 380.6 432 45.8
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.0e-103 379.8 431 46.4
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.2e-103 379.0 431 46.4
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 6.8e-103 378.6 451 46.1
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.9e-103 378.3 431 46.4
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 8.9e-103 378.3 495 42.6
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.0e-102 377.1 443 45.4
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.0e-102 377.1 469 45.4
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.4e-102 376.3 443 45.4
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 3.4e-102 376.3 437 45.1
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 9.8e-102 374.8 455 44.6
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 9.8e-102 374.8 457 44.9
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.7e-101 374.0 437 46.7
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.2e-101 373.6 431 44.3
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.8e-101 373.2 431 44.3
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.8e-100 370.5 430 46.7
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 5.4e-100 369.0 439 45.8
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 9.2e-100 368.2 413 49.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.7e-99 366.7 438 45.9
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 5.9e-99 365.5 448 44.4
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.3e-98 363.6 426 45.3
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.3e-98 363.6 428 45.1
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 2.3e-98 363.6 441 45.6
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.9e-98 362.8 443 46.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.9e-98 362.8 431 45.2
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 6.6e-98 362.1 434 46.5
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.5e-97 360.9 439 42.8
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.9e-97 360.5 448 44.6
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.3e-97 359.8 442 45.5
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.3e-97 359.8 443 46.0
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.5e-97 358.2 420 45.2
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.1e-96 357.1 446 41.9
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.1e-96 357.1 434 44.9
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 3.6e-96 356.3 438 47.3
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 3.6e-96 356.3 438 43.8
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 6.1e-96 355.5 442 44.1
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.1e-96 355.5 431 44.8
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.4e-95 354.4 440 43.6
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 4.0e-95 352.8 457 40.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.0e-95 352.8 453 43.0
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 6.8e-95 352.1 462 42.2
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 6.8e-95 352.1 445 45.4
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.2e-94 351.3 441 44.0
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.2e-94 351.3 426 44.6
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.0e-94 350.5 441 44.0
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 2.6e-94 350.1 441 44.0
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 3.4e-94 349.7 437 44.4
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.7e-93 347.4 439 44.6
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.7e-93 347.4 475 40.2
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.9e-92 344.0 447 42.5
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.2e-91 341.3 437 42.3
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 1.2e-91 341.3 445 41.8
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.7e-91 340.1 342 49.4
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 2.7e-91 340.1 451 43.9
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 5.6e-89 332.4 429 40.3
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.0e-88 328.6 560 37.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.3e-87 327.0 365 45.2
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.3e-87 327.0 433 39.0
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.2e-86 324.7 377 46.4
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.4e-86 323.2 447 39.8
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 2.9e-85 320.1 412 45.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.0e-82 311.6 423 40.4
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 3.9e-82 309.7 429 41.3
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 4.3e-81 306.2 430 39.8
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 4.3e-81 306.2 447 38.7
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.8e-80 303.5 439 39.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.1e-79 301.6 452 38.5
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 5.2e-79 299.3 433 40.0
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 5.8e-78 295.8 263 53.6
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.7e-77 293.1 282 50.0
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.7e-74 284.3 252 53.6
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-74 283.9 252 53.2
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-74 283.9 252 53.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.4e-71 273.9 263 51.3
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.1e-68 265.0 269 48.3
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.3e-65 253.1 439 37.4
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-62 243.4 324 41.7
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.7e-59 233.8 217 50.7
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 1.1e-55 221.9 438 34.5
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.0e-55 218.8 421 34.0
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 3.5e-43 180.3 438 31.3
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.8e-40 170.6 259 36.7
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.7e-40 170.2 303 37.6
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 3.1e-39 167.2 436 29.1
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.1e-39 166.8 250 39.6
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 9.0e-39 165.6 294 37.1
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 9.0e-39 165.6 265 36.2
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 3.1e-31 140.6 141 51.1
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 9.0e-31 139.0 136 46.3
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 3.1e-23 114.0 205 37.1
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 3.1e-23 114.0 205 36.6
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.0e-21 106.7 106 49.1
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 5.5e-20 103.2 415 26.7
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 6.7e-18 96.3 237 28.7
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 8.8e-18 95.9 200 35.5
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.5e-17 95.1 163 39.9
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 4.4e-17 93.6 259 25.1
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.8e-16 90.9 151 38.4
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.8e-16 90.9 151 38.4
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.8e-16 90.9 189 25.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 3.7e-16 90.5 95 44.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 7.0e-15 86.3 113 43.4
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.3e-13 82.0 248 24.2
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.9e-13 80.9 153 37.9
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.2e-12 76.3 151 42.4
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 7.2e-12 76.3 210 36.7
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.1e-11 74.7 114 38.6
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.7e-11 73.6 151 37.1
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 4.7e-11 73.6 112 33.0
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 2.8e-08 64.3 69 44.9


User provided reference genes

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