Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.3e-145 519.6 254 100.0
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.3e-128 461.5 249 89.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.9e-123 446.0 256 86.7
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.3e-121 439.1 257 84.8
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.1e-102 377.1 246 72.4
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 2.6e-101 372.5 246 71.5
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.1e-99 367.1 256 70.7
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.5e-99 365.9 247 70.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 7.2e-99 364.4 255 69.4
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 9.4e-99 364.0 256 67.6
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.1e-98 362.8 250 70.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 3.6e-98 362.1 251 70.5
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 7.9e-98 360.9 256 68.8
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.0e-97 360.5 256 68.8
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.0e-97 360.5 256 68.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.8e-97 359.8 256 68.8
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.8e-97 359.8 256 68.8
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.8e-97 359.8 256 68.8
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.8e-97 359.8 246 70.7
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 2.3e-97 359.4 256 68.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.9e-97 358.6 256 69.1
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 3.9e-97 358.6 256 68.4
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 5.1e-97 358.2 246 69.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 6.7e-97 357.8 249 69.1
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 8.8e-97 357.5 256 68.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 8.8e-97 357.5 256 68.8
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.1e-96 357.1 244 70.5
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.1e-96 357.1 246 69.5
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.0e-96 356.3 256 68.8
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.0e-96 356.3 256 68.8
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.0e-96 356.3 246 69.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.3e-96 355.5 246 69.5
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 4.3e-96 355.1 258 66.7
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.3e-96 355.1 256 68.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 5.7e-96 354.8 256 68.0
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 7.4e-96 354.4 256 68.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 7.4e-96 354.4 246 68.7
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 9.7e-96 354.0 247 69.2
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.7e-95 353.2 246 67.9
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 3.7e-95 352.1 252 67.9
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.7e-95 352.1 251 68.9
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 6.3e-95 351.3 256 67.2
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.3e-95 351.3 256 67.6
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 8.2e-95 350.9 256 66.4
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 8.2e-95 350.9 256 67.6
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.1e-94 350.5 255 67.5
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.1e-94 350.5 256 68.0
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.4e-94 350.1 256 67.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.8e-94 349.7 256 67.6
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.1e-94 349.0 251 67.7
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 3.1e-94 349.0 245 67.8
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.1e-94 348.6 254 65.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.3e-94 348.2 256 66.0
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 5.3e-94 348.2 246 68.3
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 6.9e-94 347.8 257 66.5
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 9.1e-94 347.4 251 67.7
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 9.1e-94 347.4 246 68.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 9.1e-94 347.4 257 66.9
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.2e-93 347.1 256 65.2
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.2e-93 347.1 253 66.4
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.5e-93 346.7 246 67.1
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.5e-93 346.7 246 67.1
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.5e-93 346.7 248 68.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 2.0e-93 346.3 246 68.7
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.0e-93 346.3 251 67.3
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.0e-93 346.3 256 66.8
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.6e-93 345.9 246 65.4
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.6e-93 345.9 258 65.1
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 4.5e-93 345.1 250 66.8
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 4.5e-93 345.1 251 66.9
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 5.9e-93 344.7 246 67.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 7.7e-93 344.4 246 66.7
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.0e-92 344.0 252 66.7
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.7e-92 343.2 252 65.5
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.8e-92 342.0 256 64.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 5.0e-92 341.7 256 67.2
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 6.5e-92 341.3 258 65.1
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.1e-91 340.5 251 65.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-91 340.5 257 65.8
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.4e-91 340.1 255 65.9
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.9e-91 339.7 246 67.5
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 5.5e-91 338.2 250 64.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 5.5e-91 338.2 250 64.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 5.5e-91 338.2 244 67.2
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 7.2e-91 337.8 256 64.5
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.2e-90 337.0 244 67.6
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.6e-90 336.7 244 67.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.6e-90 336.7 244 67.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.1e-90 336.3 251 65.3
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 2.1e-90 336.3 245 66.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 2.1e-90 336.3 251 65.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.7e-90 335.9 252 62.7
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 3.6e-90 335.5 256 65.2
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 6.1e-90 334.7 250 64.0
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 6.1e-90 334.7 256 63.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.8e-89 333.2 247 66.0
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.3e-89 332.8 249 63.9
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.7e-89 331.3 245 66.5
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.8e-89 330.9 256 64.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 3.3e-88 328.9 236 68.6
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 3.3e-88 328.9 236 68.6
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 7.4e-88 327.8 268 63.1
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 7.4e-88 327.8 268 63.1
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.3e-87 327.0 257 63.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.3e-87 327.0 257 63.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.7e-87 326.6 236 68.2
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.7e-87 326.6 249 63.5
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.3e-87 324.7 246 65.4
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.1e-86 323.9 249 63.1
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 7.0e-86 321.2 254 62.2
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.6e-85 320.1 254 62.2
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.3e-84 317.0 287 57.8
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.8e-84 315.5 253 62.5
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.2e-82 310.5 244 61.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 8.0e-82 307.8 246 61.4
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.0e-81 305.8 197 73.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.0e-81 305.4 256 62.1
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.6e-80 302.8 261 59.8
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 9.7e-80 300.8 184 75.5
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.7e-79 300.1 293 53.9
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.4e-78 297.0 211 64.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.8e-78 296.6 249 58.2
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.4e-78 296.2 247 60.3
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 9.1e-78 294.3 174 78.7
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.5e-77 292.4 221 65.2
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 5.9e-77 291.6 256 60.5
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.5e-75 287.0 175 74.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.3e-71 271.2 244 57.4
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 4.1e-70 268.9 246 59.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.0e-70 268.1 246 57.3
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.7e-64 248.4 153 73.9
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.2e-63 246.5 147 78.2
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.2e-63 246.5 147 78.2
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.1e-62 242.3 182 67.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-61 240.7 182 68.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 5.0e-60 235.3 252 49.2
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.6e-50 203.8 182 53.3
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 6.8e-49 198.4 170 58.8
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 9.8e-48 194.5 196 55.6
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 6.4e-47 191.8 189 56.6
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 6.4e-47 191.8 189 56.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 4.9e-39 165.6 109 70.6
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.2e-38 162.9 157 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.2e-37 161.0 134 58.2
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.8e-34 149.8 88 76.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 6.0e-29 132.1 87 74.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.8e-26 123.2 174 37.9
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.8e-24 115.5 63 76.2
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 9.9e-24 114.8 75 69.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 7.1e-22 108.6 103 54.4
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 7.1e-22 108.6 103 54.4
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.0e-20 104.8 75 73.3
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.0e-20 103.2 168 35.1
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 6.6e-20 102.1 108 54.6
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.2e-14 83.2 83 60.2
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 5.1e-12 75.9 94 47.9
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.4e-09 67.8 197 29.9
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 7.6e-08 62.0 52 53.8
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.9e-06 57.4 38 71.1
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.9e-06 57.4 50 48.0
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.4e-06 57.0 200 24.5
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 4.2e-06 56.2 54 51.9


User provided reference genes

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