Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.7e-263 911.4 438 100.0
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.8e-243 845.5 437 91.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 3.0e-238 828.2 435 89.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 5.5e-232 807.4 433 87.1
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.0e-230 801.6 438 86.3
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.2e-230 800.8 438 85.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 9.7e-229 796.6 432 85.6
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-228 796.2 433 86.4
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.8e-228 795.0 490 78.2
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.4e-227 792.7 433 85.9
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.8e-227 792.3 437 85.8
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.4e-227 792.0 433 85.9
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.1e-227 791.2 437 85.1
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 5.3e-227 790.8 435 85.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.0e-227 790.4 438 84.7
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 9.1e-227 790.0 438 84.2
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.7e-226 788.5 438 83.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.0e-225 786.6 428 86.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.7e-225 785.8 438 84.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 5.0e-225 784.3 437 83.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-223 779.6 437 83.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.2e-223 779.6 438 83.3
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.1e-223 778.9 437 83.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 4.7e-223 777.7 437 83.1
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 4.7e-223 777.7 437 83.1
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.0e-223 776.9 433 83.4
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.0e-222 776.5 452 81.0
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.0e-222 776.5 437 82.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 3.0e-222 775.0 437 82.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 5.2e-222 774.2 430 83.7
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 6.8e-222 773.9 438 81.7
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 4.4e-221 771.2 430 83.5
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 4.4e-221 771.2 433 83.8
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.3e-220 769.6 438 82.2
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.7e-220 769.2 438 82.0
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.2e-220 768.8 430 83.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.8e-220 768.5 430 82.6
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.8e-220 767.7 438 82.2
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 4.8e-220 767.7 432 81.9
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 8.3e-220 766.9 430 83.3
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.4e-219 766.1 433 82.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.4e-219 765.4 434 83.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 7.0e-219 763.8 438 82.0
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-218 762.3 433 81.1
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.7e-218 761.9 430 82.1
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.5e-218 761.5 430 83.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.5e-218 761.5 435 81.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 4.5e-218 761.1 436 81.4
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 4.5e-218 761.1 445 80.7
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.5e-218 761.1 438 81.1
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.0e-217 760.0 431 81.9
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 1.7e-217 759.2 437 80.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.8e-217 758.1 430 81.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.8e-217 758.1 433 80.8
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.0e-217 757.7 433 80.4
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 6.6e-217 757.3 438 81.7
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 8.6e-217 756.9 509 73.1
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.1e-216 756.5 437 79.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-216 756.1 444 80.6
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.5e-216 755.4 437 81.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.5e-216 755.4 437 81.0
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.5e-216 755.4 437 79.6
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.2e-216 754.6 430 80.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.2e-216 753.8 433 80.6
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.5e-216 753.4 433 80.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.1e-215 752.3 431 81.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.8e-215 751.9 433 82.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.6e-215 751.5 430 80.7
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.6e-215 751.5 433 81.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 3.6e-215 751.5 430 80.5
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 4.7e-215 751.1 438 79.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 8.0e-215 750.4 438 79.2
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.4e-214 749.6 524 70.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.8e-214 749.2 433 80.1
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.3e-214 748.8 471 75.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 4.0e-214 748.0 431 80.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.2e-214 747.7 433 79.9
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.3e-212 743.0 413 86.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.2e-212 742.3 435 79.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 6.3e-212 740.7 435 79.3
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 5.4e-211 737.6 436 78.4
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 2.7e-210 735.3 433 78.8
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.6e-209 730.7 431 78.4
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.1e-207 725.7 414 83.1
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.1e-207 725.7 433 77.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.9e-204 715.3 432 77.3
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.7e-204 714.9 432 77.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.4e-203 713.0 392 86.5
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.5e-202 708.4 405 82.2
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.6e-202 708.0 433 76.9
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 5.0e-201 704.5 409 81.2
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 5.6e-200 701.0 431 75.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.6e-199 698.4 400 81.0
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.5e-197 690.6 433 75.8
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.7e-194 682.2 433 73.4
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 7.8e-194 680.6 440 72.0
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.3e-193 679.9 432 74.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.3e-193 679.1 428 74.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.2e-191 673.3 441 71.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 8.9e-190 667.2 427 73.5
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.9e-187 659.4 437 69.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.7e-185 652.9 427 71.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.6e-183 646.4 438 73.1
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.8e-182 642.9 435 67.1
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-179 633.3 340 87.9
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.2e-179 632.1 427 69.8
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.4e-179 631.3 330 89.1
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.6e-175 619.8 436 66.1
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.8e-174 616.3 341 83.6
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.9e-174 614.4 432 66.4
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 3.2e-171 605.5 339 82.9
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.5e-168 596.7 356 79.2
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.3e-168 595.1 386 73.8
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 7.3e-168 594.3 436 63.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.1e-166 589.0 434 69.1
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.4e-163 580.1 437 62.2
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.4e-163 578.2 437 62.2
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.4e-160 567.8 438 62.3
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.3e-159 567.0 426 62.0
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.8e-148 528.9 289 84.8
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 9.3e-147 524.2 336 73.2
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.0e-145 520.8 349 70.8
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.7e-145 517.7 434 57.8
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-138 496.1 382 65.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.8e-129 466.8 432 52.1
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 7.2e-115 418.3 223 88.3
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.6e-109 400.6 352 58.0
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.3e-105 386.7 236 76.7
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-89 334.3 228 68.9
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 9.8e-80 301.6 187 74.3
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.6e-76 288.5 157 87.9
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.7e-74 282.7 176 74.4
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.0e-68 265.0 145 85.5
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.6e-66 256.5 197 66.5
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.1e-60 236.1 228 57.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.6e-59 232.6 134 79.9
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.1e-50 202.2 113 81.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.3e-46 188.7 107 77.6
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 3.7e-42 176.8 138 63.0
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-39 167.9 88 89.8
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-34 151.4 93 76.3
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 7.6e-32 142.5 82 82.9
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.8e-31 140.2 204 40.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 9.3e-30 135.6 165 44.8
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-25 120.9 80 72.5
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.7e-23 114.8 258 33.3
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 4.2e-22 110.2 89 57.3
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 2.1e-21 107.8 63 81.0
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 6.1e-21 106.3 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.7e-18 97.1 72 56.9
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 5.0e-15 86.7 118 43.2
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-14 84.0 96 47.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.7e-13 80.9 38 86.8
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.1e-09 68.9 47 66.0
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-09 68.9 81 48.1
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 1.7e-07 61.6 270 23.7
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 3.8e-07 60.5 69 50.7
MSTRG.22610 Avicennia marina HOM05D000617 ORTHO05D000478 1.5e-06 58.5 278 23.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 7.2e-06 56.2 35 68.6


User provided reference genes

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