Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.4e-130 469.5 226 100.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.8e-122 442.6 226 92.9
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 3.5e-121 438.3 224 91.5
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.8e-118 428.7 224 89.7
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 4.4e-116 421.4 225 85.8
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.3e-115 419.9 225 86.2
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.3e-115 419.9 225 85.8
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.8e-115 418.7 225 85.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.9e-115 417.9 225 85.3
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 1.1e-114 416.8 221 87.3
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.4e-114 416.4 225 84.4
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.8e-114 416.0 222 86.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.2e-113 413.3 226 83.2
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.2e-113 413.3 222 85.1
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.2e-113 413.3 225 85.3
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.6e-113 412.9 222 85.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 2.7e-113 412.1 223 83.9
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.7e-113 412.1 221 85.5
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 4.6e-113 411.4 222 83.8
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 5.9e-113 411.0 222 84.2
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 7.8e-113 410.6 217 88.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.8e-113 410.6 222 85.1
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.0e-112 410.2 225 82.7
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.7e-112 409.5 221 85.1
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.7e-112 409.5 223 84.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 2.3e-112 409.1 226 83.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.9e-112 408.7 221 85.1
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.9e-112 408.7 222 83.8
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.9e-112 408.7 225 82.2
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.9e-112 408.3 222 83.3
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 3.9e-112 408.3 225 83.1
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 3.9e-112 408.3 225 81.8
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 5.0e-112 407.9 220 85.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.0e-112 407.9 225 83.1
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 5.0e-112 407.9 222 82.9
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 8.6e-112 407.1 221 84.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 8.6e-112 407.1 226 82.7
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 8.6e-112 407.1 226 82.7
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 8.6e-112 407.1 222 83.3
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 82.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.9e-111 406.0 226 82.3
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.5e-111 405.6 221 82.8
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.5e-111 405.6 225 82.2
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.5e-111 405.6 226 81.9
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.5e-111 405.6 222 83.8
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.5e-111 405.6 245 78.4
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.5e-111 405.6 222 83.3
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 3.3e-111 405.2 226 84.1
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.3e-111 404.8 225 82.7
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 5.6e-111 404.4 221 83.3
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 5.6e-111 404.4 226 80.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 9.5e-111 403.7 222 82.4
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.2e-110 403.3 222 83.3
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.6e-110 402.9 219 84.9
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.6e-110 402.9 221 82.8
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.6e-110 402.9 223 83.9
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.1e-110 402.5 222 81.1
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 84.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.1e-110 402.5 221 82.8
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.6e-110 401.7 223 82.5
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 82.8
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 4.7e-110 401.4 223 82.1
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 4.7e-110 401.4 235 80.9
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 6.1e-110 401.0 221 83.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 6.1e-110 401.0 223 82.5
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 8.0e-110 400.6 221 82.8
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 8.0e-110 400.6 223 82.5
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.0e-109 400.2 215 85.1
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 83.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.4e-109 399.8 223 81.2
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.8e-109 399.4 220 83.6
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.8e-109 399.4 219 83.6
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 2.3e-109 399.1 220 83.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.1e-109 398.7 218 83.9
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 4.0e-109 398.3 220 83.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 4.0e-109 398.3 220 83.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 4.0e-109 398.3 220 83.2
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 6.8e-109 397.5 225 81.8
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.2e-108 396.7 221 83.3
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-108 396.7 221 82.4
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.5e-108 396.4 222 80.2
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.0e-108 396.0 221 83.7
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.0e-108 396.0 220 83.2
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.6e-108 395.6 221 81.4
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 3.4e-108 395.2 222 82.9
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.4e-108 395.2 221 81.4
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 4.4e-108 394.8 220 81.4
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 4.4e-108 394.8 222 82.0
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 5.8e-108 394.4 221 82.4
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 5.8e-108 394.4 222 82.0
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 7.5e-108 394.0 221 81.0
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 7.5e-108 394.0 248 74.2
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 9.8e-108 393.7 222 81.5
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.3e-107 393.3 223 80.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.7e-107 392.9 220 82.3
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.7e-107 392.9 220 81.8
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 81.9
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.2e-107 392.5 224 79.9
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 4.9e-107 391.3 223 80.3
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.3
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.3
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.3
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.1e-106 390.2 224 79.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.9e-106 389.4 223 80.3
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 220 80.5
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.4e-106 389.0 225 79.1
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 4.1e-106 388.3 212 83.5
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.0e-105 386.0 212 83.0
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.7e-105 385.6 221 81.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 3.5e-105 385.2 223 78.0
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-104 382.9 276 67.8
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 6.6e-104 380.9 218 79.8
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.9e-103 379.4 216 81.0
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.9e-103 379.4 223 79.8
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 8.1e-102 374.0 218 78.9
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.1e-101 373.6 216 79.2
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.4e-98 363.2 208 82.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-97 359.0 221 71.9
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.9e-95 352.8 230 73.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.3e-91 340.1 219 70.3
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 1.6e-89 333.2 219 68.5
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.3e-88 330.1 213 68.1
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 6.2e-86 321.2 223 64.6
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 5.1e-80 301.6 163 89.6
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.1e-79 300.4 164 87.8
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-75 287.0 152 85.5
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 3.5e-73 278.9 169 74.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.6e-73 278.5 159 78.0
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 5.6e-71 271.6 219 58.4
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-64 250.4 130 84.6
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.1e-63 247.3 158 73.4
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 2.1e-62 243.0 133 84.2
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 4.9e-59 231.9 210 52.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 8.4e-59 231.1 209 54.5
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.5e-55 220.3 209 48.3
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.6e-54 216.9 148 75.7
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.2e-52 210.7 111 89.2
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 9.3e-50 201.1 114 77.2
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.5e-49 199.1 114 77.2
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.5e-44 182.2 130 60.8
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.1e-37 161.0 102 73.5
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.6e-36 156.4 97 84.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.5e-36 155.6 87 73.6
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.0e-35 154.5 215 38.6
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 2.4e-29 133.3 133 50.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.6e-28 129.8 75 84.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.0e-27 125.6 65 86.2
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.5e-26 124.0 60 91.7
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.2e-26 122.9 78 75.6
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.2e-25 120.9 83 65.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 2.2e-22 110.2 54 90.7
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-21 107.1 68 67.6
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.2e-20 104.4 61 82.0
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.9e-19 99.8 58 79.3
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 6.5e-19 98.6 61 78.7
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.2e-18 96.3 64 71.9
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.2e-17 94.4 64 73.4
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 7.5e-15 85.1 54 75.9
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.2e-14 83.6 128 43.8
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 6.3e-14 82.0 100 45.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 76.6 51 70.6
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-10 70.1 39 76.9
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.2e-07 61.2 35 82.9
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 7.5e-07 58.5 43 67.4


User provided reference genes

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