Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 0.0e+00 2199.5 1110 100.0
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 0.0e+00 1511.9 1112 70.4
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 0.0e+00 1411.4 1060 69.3
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 0.0e+00 1211.4 1117 60.0
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.5e-257 893.6 1174 45.1
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 2.1e-256 889.8 1176 45.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 4.3e-241 839.0 1181 44.2
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.1e-235 820.1 1169 42.6
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 6.1e-235 818.5 1156 43.0
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 6.5e-229 798.5 1169 41.1
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.9e-228 797.0 1169 41.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 1.4e-223 780.8 1166 41.2
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.1e-215 753.1 1159 41.5
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 7.7e-214 748.4 1178 40.8
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.9e-212 743.8 1176 40.0
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.2e-209 734.6 1199 40.2
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.4e-207 726.9 1169 39.3
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 9.4e-204 714.9 1159 38.8
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.6e-203 714.1 1153 38.6
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 4.1e-199 699.5 1168 38.1
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 4.1e-199 699.5 1172 38.4
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1170 37.3
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 4.5e-198 696.0 1185 38.4
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 8.6e-197 691.8 1172 38.5
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 9.5e-196 688.3 1147 37.8
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.6e-195 686.4 1172 38.2
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.6e-195 686.4 1172 38.2
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.0e-194 684.9 1174 37.3
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.4e-194 684.5 1176 37.3
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 6.4e-192 675.6 1153 38.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 1.0e-189 668.3 1156 37.9
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.9e-189 666.4 1169 38.2
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 6.6e-189 665.6 1162 37.1
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.0e-186 658.3 1173 36.7
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 3.4e-185 653.3 1193 36.2
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.3e-184 651.4 1160 36.0
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.7e-184 651.0 1166 36.7
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 3.7e-184 649.8 1194 36.5
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.6e-182 644.4 1170 36.5
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.1e-180 638.3 1165 37.6
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 9.5e-180 635.2 1166 37.2
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.8e-178 630.9 1162 35.5
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 1.8e-178 630.9 1168 36.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.5e-177 627.9 1131 38.0
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 4.4e-177 626.3 1152 36.4
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.2e-176 624.0 1170 36.2
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 4.9e-176 622.9 1159 34.6
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.4e-175 621.3 1154 35.9
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.7e-174 617.1 1179 35.8
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 7.8e-174 615.5 1144 37.1
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.0e-173 615.1 1161 35.7
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.3e-173 614.0 1179 35.7
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.3e-173 614.0 1161 36.1
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.9e-173 613.2 1148 35.1
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.5e-172 610.5 1085 36.9
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 5.8e-169 599.4 1135 36.8
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 7.6e-169 599.0 1174 34.8
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 6.4e-168 595.9 981 39.6
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.4e-168 595.9 1157 34.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 8.4e-168 595.5 1156 34.3
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 5.4e-167 592.8 1153 34.1
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.5e-164 584.7 1157 34.3
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 7.3e-164 582.4 1154 33.8
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.4e-162 578.2 1160 33.6
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.1e-162 577.0 1151 34.8
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 5.2e-162 576.2 1150 33.6
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 8.9e-162 575.5 1140 35.4
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.6e-161 573.9 1264 33.2
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 2.6e-161 573.9 1166 34.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 7.6e-161 572.4 1102 36.4
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.3e-160 571.6 1154 33.5
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 8.4e-160 568.9 1118 36.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.4e-159 568.2 1150 33.0
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 5.4e-159 566.2 1154 32.8
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.3e-157 560.8 1147 33.5
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 3.0e-157 560.5 1163 34.2
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.5e-156 558.1 1161 33.2
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 5.6e-156 556.2 1005 37.4
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.2e-153 548.5 1159 33.0
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.4e-151 541.6 1166 32.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.4e-151 541.6 1160 33.2
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.8e-146 524.6 1198 33.0
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 5.8e-145 519.6 1150 31.7
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 6.9e-138 496.1 1039 34.8
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 7.9e-134 482.6 988 35.3
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 7.4e-132 476.1 1161 32.2
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 4.8e-131 473.4 939 34.8
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 4.2e-127 460.3 911 35.1
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 1.0e-125 455.7 1214 29.6
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 7.2e-119 433.0 664 40.1
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.0e-117 429.1 899 34.4
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 7.7e-113 412.9 1273 27.8
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 9.4e-111 406.0 954 30.8
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 4.8e-107 393.7 1231 27.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 3.2e-103 380.9 894 30.9
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 8.0e-102 376.3 442 47.7
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 2.5e-79 301.6 799 31.5
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 1.7e-75 288.9 306 50.0
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 2.2e-75 288.5 852 28.5
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.7e-75 287.7 310 49.7
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 3.5e-73 281.2 306 49.3
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.3e-72 279.3 316 49.4
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.9e-72 277.7 306 50.7
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.9e-71 275.4 429 39.4
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 4.3e-71 274.2 316 49.1
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.8e-70 271.6 1254 23.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 2.6e-68 265.0 276 53.6
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 4.4e-68 264.2 1278 24.6
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 4.4e-60 237.7 306 44.1
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 7.5e-60 236.9 308 44.2
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.3e-59 236.1 239 50.2
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 3.7e-59 234.6 308 43.5
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.2e-54 219.5 240 48.3
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.2e-52 213.0 514 32.3
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.5e-52 212.6 365 38.6
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 9.9e-52 209.9 177 55.9
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 2.8e-46 191.8 204 49.5
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 3.6e-46 191.4 178 55.6
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.0e-44 185.7 177 55.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.9e-42 179.1 364 33.8
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 5.4e-42 177.6 365 30.1
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 5.1e-40 171.0 177 46.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 3.3e-39 168.3 187 45.5
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 1.6e-38 166.0 170 52.9
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 5.8e-36 157.5 984 22.0
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 5.3e-29 134.4 326 29.8
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 2.0e-28 132.5 127 55.1
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.6e-25 122.9 237 34.2
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.6e-22 112.8 280 31.1
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.4e-20 105.1 414 25.8
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.9e-19 102.1 496 24.2
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.9e-19 101.3 301 26.2
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 7.1e-18 97.4 105 49.5
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.6e-17 94.7 106 49.1
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 2.2e-14 85.9 227 29.5
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 8.2e-14 84.0 108 45.4
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.8e-13 82.8 89 51.7
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.3e-11 76.6 78 50.0
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 1.3e-11 76.6 78 50.0
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.5e-11 74.3 246 26.8
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-08 66.2 129 37.2
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 3.0e-08 65.5 63 54.0


User provided reference genes

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