Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 7.9e-92 340.5 181 100.0
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 3.8e-62 241.9 187 69.5
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 3.8e-62 241.9 181 72.4
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 2.8e-49 199.1 180 61.1
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.1e-48 197.2 184 57.6
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 3.8e-46 188.7 182 58.2
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 8.6e-46 187.6 181 59.7
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.9e-45 186.4 177 58.8
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.9e-45 186.4 181 56.9
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 2.5e-45 186.0 181 56.9
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 4.2e-45 185.3 180 56.7
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 2.8e-44 182.6 178 56.2
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 2.8e-44 182.6 179 55.3
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 3.6e-44 182.2 185 54.6
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.0e-43 180.6 177 55.4
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 1.4e-43 180.3 184 52.7
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 2.3e-43 179.5 182 54.9
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 2.3e-43 179.5 179 56.4
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 2.3e-43 179.5 174 60.9
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 3.0e-43 179.1 180 57.2
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 6.8e-43 177.9 183 56.8
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 6.8e-43 177.9 179 55.3
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 8.9e-43 177.6 179 59.8
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 1.2e-42 177.2 182 54.9
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 2.0e-42 176.4 183 53.0
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 2.0e-42 176.4 178 55.6
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 2.6e-42 176.0 180 56.7
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 2.6e-42 176.0 181 54.7
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 5.7e-42 174.9 181 55.8
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 5.7e-42 174.9 179 54.2
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 7.5e-42 174.5 183 52.5
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 1.3e-41 173.7 181 54.1
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 3.7e-41 172.2 179 54.7
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 4.9e-41 171.8 177 57.6
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 6.3e-41 171.4 178 51.1
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.3e-41 171.0 177 55.4
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 1.8e-40 169.9 177 53.7
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 4.1e-40 168.7 178 58.4
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 5.4e-40 168.3 173 56.1
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 9.2e-40 167.5 182 52.2
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.2e-39 167.2 173 54.3
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 2.7e-39 166.0 179 51.4
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.9e-39 164.9 177 53.7
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 7.8e-39 164.5 177 54.2
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 7.8e-39 164.5 177 54.2
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 2.3e-38 162.9 177 56.5
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 6.6e-38 161.4 177 53.7
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 2.5e-37 159.5 171 52.6
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 3.3e-37 159.1 181 50.3
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 4.3e-37 158.7 180 52.2
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 7.3e-37 157.9 176 52.3
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 9.5e-37 157.5 178 54.5
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 2.8e-36 156.0 176 54.5
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.6e-36 155.6 177 52.5
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 4.7e-36 155.2 180 52.8
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 4.7e-36 155.2 180 55.6
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 4.7e-36 155.2 177 50.3
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 8.0e-36 154.5 176 54.0
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.0e-35 154.1 174 53.4
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 1.0e-35 154.1 178 50.6
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 1.4e-35 153.7 180 53.9
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 3.1e-35 152.5 171 56.7
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 6.8e-35 151.4 173 50.9
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 8.9e-35 151.0 177 51.4
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 1.5e-34 150.2 179 48.0
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.0e-34 149.8 172 51.2
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 2.0e-34 149.8 172 51.2
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 3.4e-34 149.1 169 55.6
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 5.8e-34 148.3 176 52.3
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 9.8e-34 147.5 179 49.2
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.3e-33 147.1 183 45.4
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.3e-33 147.1 172 51.7
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.3e-33 147.1 182 49.5
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 1.7e-33 146.7 170 52.4
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 2.2e-33 146.4 168 50.0
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 2.2e-33 146.4 168 50.0
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 3.7e-33 145.6 173 46.2
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.9e-33 145.2 176 50.0
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 6.4e-33 144.8 171 48.5
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 1.1e-32 144.1 179 47.5
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.1e-32 144.1 185 47.0
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.1e-32 144.1 114 62.3
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.4e-32 142.9 168 51.2
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 3.2e-32 142.5 192 45.8
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 3.2e-32 142.5 176 47.7
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 7.0e-32 141.4 172 52.3
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 9.2e-32 141.0 181 46.4
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 9.2e-32 141.0 180 51.7
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 9.2e-32 141.0 175 47.4
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.2e-31 140.6 169 46.7
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 2.0e-31 139.8 177 46.9
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 3.5e-31 139.0 173 43.9
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 4.6e-31 138.7 173 43.9
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 4.6e-31 138.7 173 43.9
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 4.6e-31 138.7 173 47.4
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 6.0e-31 138.3 167 47.9
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 6.0e-31 138.3 167 48.5
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 7.8e-31 137.9 177 45.2
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.0e-30 137.5 177 44.1
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 1.0e-30 137.5 175 44.6
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.3e-30 137.1 179 49.2
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 2.3e-30 136.3 173 43.4
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 2.3e-30 136.3 178 44.4
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 3.0e-30 136.0 169 49.7
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 3.0e-30 136.0 168 49.4
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 3.9e-30 135.6 170 48.8
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 6.6e-30 134.8 175 46.3
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 8.6e-30 134.4 170 47.1
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 8.6e-30 134.4 167 47.3
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.1e-29 134.0 173 43.4
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.9e-29 133.3 171 49.7
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 4.3e-29 132.1 177 44.1
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 4.3e-29 132.1 177 44.1
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 4.3e-29 132.1 167 47.3
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 5.6e-29 131.7 173 43.4
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 9.5e-29 131.0 110 59.1
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 6.2e-28 128.3 175 49.1
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 8.0e-28 127.9 177 43.5
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 8.0e-28 127.9 177 43.5
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 8.0e-28 127.9 171 48.0
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 3.1e-27 125.9 173 45.7
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 4.0e-27 125.6 177 43.5
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 5.2e-27 125.2 170 44.1
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 3.4e-26 122.5 113 54.9
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 4.4e-26 122.1 178 44.4
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 7.5e-26 121.3 179 43.0
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 3.7e-25 119.0 171 40.9
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 4.3e-21 105.5 176 37.5
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 2.3e-14 83.2 188 30.9
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 3.9e-14 82.4 116 48.3
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 3.4e-10 69.3 85 41.2
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 3.4e-10 69.3 176 31.8
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.6e-07 60.5 172 26.7


User provided reference genes

Program Settings