Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.3e-58 229.6 118 100.0
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 3.2e-41 171.8 114 78.9
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 1.0e-39 166.8 105 81.9
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 2.6e-35 152.1 105 73.3
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.3e-34 149.8 105 68.6
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.7e-34 149.4 98 74.5
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 2.9e-34 148.7 106 68.9
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.9e-34 148.7 105 68.6
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 8.4e-34 147.1 106 68.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 8.4e-34 147.1 106 68.9
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 8.4e-34 147.1 106 68.9
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.1e-33 146.7 98 73.5
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.4e-33 146.4 101 70.3
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.9e-33 146.0 98 72.4
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 4.1e-33 144.8 105 66.7
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 4.1e-33 144.8 101 69.3
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.1e-33 144.8 98 72.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 4.1e-33 144.8 98 72.4
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 7.1e-33 144.1 98 72.4
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 9.2e-33 143.7 98 71.4
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.2e-32 143.3 102 70.6
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.6e-32 142.9 101 68.3
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.6e-32 142.9 98 71.4
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.6e-32 142.9 101 68.3
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.6e-32 142.9 105 66.7
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 2.7e-32 142.1 98 68.4
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.7e-32 142.1 99 67.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.7e-32 142.1 98 71.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 2.7e-32 142.1 98 69.4
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.7e-32 142.1 98 69.4
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.7e-32 142.1 98 69.4
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.7e-32 142.1 98 69.4
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.5e-32 141.7 98 71.4
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 4.6e-32 141.4 98 71.4
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 4.6e-32 141.4 98 71.4
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 4.6e-32 141.4 105 68.6
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.0e-32 141.0 101 68.3
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.0e-32 141.0 101 68.3
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 6.0e-32 141.0 105 64.8
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 6.0e-32 141.0 98 71.4
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 6.0e-32 141.0 107 66.4
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 7.8e-32 140.6 105 64.8
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 7.8e-32 140.6 106 69.8
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.0e-31 140.2 98 69.4
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.3e-31 139.8 100 69.0
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.3e-31 139.8 98 70.4
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.7e-31 139.4 98 68.4
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.3e-31 139.0 107 67.3
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 2.3e-31 139.0 98 72.4
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 3.0e-31 138.7 105 62.9
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.0e-31 138.7 101 70.3
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.0e-31 138.7 101 70.3
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.0e-31 138.7 98 69.4
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 3.9e-31 138.3 105 66.7
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 3.9e-31 138.3 109 63.3
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 5.1e-31 137.9 98 71.4
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 6.6e-31 137.5 98 66.3
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 6.6e-31 137.5 101 67.3
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 6.6e-31 137.5 98 66.3
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 6.6e-31 137.5 98 66.3
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 6.6e-31 137.5 101 66.3
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 8.6e-31 137.1 105 64.8
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.1e-30 136.7 98 66.3
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.5e-30 136.3 99 66.7
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 1.9e-30 136.0 98 70.4
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.9e-30 136.0 98 70.4
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.9e-30 136.0 101 66.3
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.9e-30 136.0 103 68.0
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 2.5e-30 135.6 101 66.3
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 2.5e-30 135.6 98 64.3
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 4.3e-30 134.8 101 60.4
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 5.6e-30 134.4 98 68.4
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 9.6e-30 133.7 98 69.4
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.2e-29 133.3 98 69.4
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.6e-29 132.9 105 61.9
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 2.8e-29 132.1 102 67.6
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 3.6e-29 131.7 98 64.3
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 4.7e-29 131.3 98 66.3
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 4.7e-29 131.3 98 64.3
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 4.7e-29 131.3 106 64.2
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 4.7e-29 131.3 98 67.3
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 8.1e-29 130.6 98 68.4
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.1e-28 130.2 110 61.8
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.4e-28 129.8 98 68.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 5.2e-28 127.9 95 67.4
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 5.2e-28 127.9 98 58.2
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 6.9e-28 127.5 98 65.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.2e-27 126.7 99 64.6
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 9.9e-27 123.6 105 61.9
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.3e-26 123.2 98 62.2
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 6.4e-26 120.9 98 63.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.1e-25 120.2 98 57.1
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.2e-25 118.2 89 64.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 5.4e-25 117.9 98 55.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 7.1e-25 117.5 89 65.2
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.0e-23 112.1 98 55.1
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 8.7e-23 110.5 85 61.2
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.8e-21 105.5 89 53.9
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.5e-19 99.8 99 45.5
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.6e-19 99.0 99 44.4
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.5e-19 98.2 110 50.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 9.9e-19 97.1 86 54.7
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.1e-17 93.6 105 41.9
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.1e-16 89.4 99 42.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.1e-16 89.4 99 42.4
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.7e-16 89.0 100 46.0
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.3e-15 86.7 85 54.1
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.3e-15 85.9 85 54.1
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.0e-11 72.8 76 51.3
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.6e-11 72.4 64 56.2
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 5.8e-11 71.2 98 35.7
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.4e-09 66.6 98 33.7
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.2e-09 65.5 98 34.7
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.9e-06 56.2 103 35.0


User provided reference genes

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