Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 4.2e-170 601.3 307 100.0
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 9.2e-125 450.7 320 77.5
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 3.6e-121 438.7 306 75.5
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 2.3e-83 313.2 262 62.6
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 3.3e-82 309.3 291 59.1
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 5.6e-82 308.5 285 59.6
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 5.6e-82 308.5 301 59.5
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.6e-81 307.0 243 65.0
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 2.1e-81 306.6 261 64.0
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 3.7e-81 305.8 323 55.4
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 6.2e-81 305.1 311 56.9
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 9.0e-80 301.2 312 55.1
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.5e-79 300.4 301 58.1
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.5e-79 300.4 303 57.8
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 2.0e-79 300.1 299 56.9
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 2.0e-79 300.1 319 55.5
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 2.2e-78 296.6 300 57.0
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 2.9e-78 296.2 308 54.2
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 3.8e-78 295.8 294 54.4
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 4.9e-78 295.4 266 60.2
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 4.9e-78 295.4 260 62.3
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 6.5e-78 295.0 343 53.4
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 6.5e-78 295.0 241 63.5
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 8.4e-78 294.7 295 58.0
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 3.2e-77 292.7 330 52.4
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 9.3e-77 291.2 292 56.8
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 9.3e-77 291.2 223 65.5
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 1.2e-76 290.8 294 55.4
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.2e-76 290.8 299 55.5
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 1.2e-76 290.8 286 55.9
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 2.1e-76 290.0 262 60.7
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 2.1e-76 290.0 296 56.8
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 3.5e-76 289.3 302 55.6
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 3.5e-76 289.3 290 56.9
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 4.6e-76 288.9 243 63.0
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 7.9e-76 288.1 299 55.2
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 7.9e-76 288.1 298 55.0
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 1.3e-75 287.3 303 55.8
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 2.3e-75 286.6 269 56.9
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 3.0e-75 286.2 323 52.0
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 3.9e-75 285.8 249 61.8
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 3.9e-75 285.8 290 56.6
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 5.1e-75 285.4 290 55.5
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 6.7e-75 285.0 269 58.7
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 6.7e-75 285.0 296 53.7
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 8.7e-75 284.6 308 54.2
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 8.7e-75 284.6 344 49.4
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 8.7e-75 284.6 311 53.7
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 8.7e-75 284.6 241 61.4
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.1e-74 284.3 241 61.0
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.5e-74 283.9 298 55.4
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 1.5e-74 283.9 291 56.4
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 2.5e-74 283.1 287 55.7
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 2.5e-74 283.1 250 58.8
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 5.7e-74 282.0 245 57.6
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 5.7e-74 282.0 268 57.8
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 5.7e-74 282.0 307 54.7
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 5.7e-74 282.0 272 58.5
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 7.4e-74 281.6 275 57.5
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 7.4e-74 281.6 254 60.2
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 9.6e-74 281.2 269 58.7
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 1.6e-73 280.4 241 57.7
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 2.1e-73 280.0 251 57.8
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 2.8e-73 279.6 271 54.2
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 2.8e-73 279.6 287 54.4
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 2.8e-73 279.6 294 53.4
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 3.7e-73 279.3 249 58.2
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 3.7e-73 279.3 286 56.6
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 4.8e-73 278.9 320 51.6
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 8.2e-73 278.1 270 55.6
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 8.2e-73 278.1 316 49.1
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.1e-72 277.7 241 58.1
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.1e-72 277.7 241 58.1
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 1.1e-72 277.7 269 55.0
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 1.8e-72 276.9 313 54.0
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 3.1e-72 276.2 228 63.2
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 3.1e-72 276.2 307 53.4
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 5.3e-72 275.4 241 58.1
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 5.3e-72 275.4 253 57.7
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.2e-71 274.2 263 58.2
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 1.5e-71 273.9 279 54.1
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 1.5e-71 273.9 233 59.7
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.5e-71 272.3 329 50.8
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 1.0e-70 271.2 272 57.4
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 1.7e-70 270.4 252 56.7
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 5.0e-70 268.9 322 50.9
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 6.5e-70 268.5 322 51.2
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.1e-69 267.7 225 60.0
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 2.5e-69 266.5 244 58.2
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 8.7e-67 258.1 224 58.9
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 8.7e-67 258.1 224 58.9
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 1.5e-66 257.3 203 64.5
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 7.4e-66 255.0 316 47.5
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 1.4e-64 250.8 195 65.6
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 3.1e-64 249.6 224 56.7
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 4.1e-64 249.2 272 53.3
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 3.4e-63 246.1 260 53.1
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 4.5e-63 245.7 231 55.0
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-61 240.7 276 50.0
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.5e-61 240.0 255 52.2
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 8.2e-57 224.9 193 59.6
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 1.8e-56 223.8 317 43.8
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 9.1e-56 221.5 182 59.9
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 1.5e-55 220.7 238 50.8
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 7.2e-53 211.8 255 49.8
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 5.2e-51 205.7 238 49.6
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 5.7e-50 202.2 245 45.7
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 7.4e-50 201.8 140 70.0
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 1.8e-48 197.2 146 66.4
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 3.1e-48 196.4 234 48.7
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 3.8e-46 189.5 308 40.3
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 3.0e-43 179.9 258 41.5
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 7.0e-40 168.7 249 43.4
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 5.9e-39 165.6 193 50.8
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 3.2e-37 159.8 219 43.8
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 3.2e-37 159.8 219 43.8
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 5.5e-37 159.1 181 52.5
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 1.4e-35 154.5 220 42.3
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 7.7e-31 138.7 204 39.7
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.5e-26 124.4 270 34.1
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 1.2e-23 114.8 87 65.5
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 2.0e-23 114.0 99 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.7e-22 110.9 190 40.0
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 2.3e-11 73.9 66 57.6


User provided reference genes

Program Settings