Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.7e-97 358.6 173 100.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.9e-91 338.6 173 93.1
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 4.9e-91 337.8 173 93.6
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 7.1e-90 334.0 167 95.2
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.4e-85 318.9 174 87.4
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 5.2e-85 317.8 174 87.4
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 8.9e-85 317.0 170 88.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.5e-84 316.2 172 88.4
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 2.6e-84 315.5 174 87.9
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.4e-84 315.1 173 87.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.8e-84 314.3 171 86.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 5.8e-84 314.3 172 87.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 7.6e-84 313.9 171 88.3
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 7.6e-84 313.9 171 87.7
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.9e-84 313.5 173 85.5
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.3e-83 313.2 173 85.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.8e-83 311.6 172 87.2
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 4.9e-83 311.2 173 87.9
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 6.4e-83 310.8 170 85.9
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 8.4e-83 310.5 173 85.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 8.4e-83 310.5 174 86.8
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.1e-82 310.1 174 86.2
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.4e-82 309.7 172 85.5
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-82 309.7 170 85.9
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.9e-82 309.3 170 85.9
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.9e-82 309.3 168 87.5
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.4e-82 308.9 172 86.6
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.2e-82 308.5 170 85.9
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.2e-82 308.1 174 85.1
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.2e-82 308.1 172 84.3
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.2e-82 308.1 174 84.5
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 5.4e-82 307.8 171 86.0
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.4e-82 307.8 168 86.9
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 9.3e-82 307.0 170 85.9
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.1e-81 305.8 172 83.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.1e-81 305.8 172 83.1
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.5e-81 305.1 172 83.7
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 4.6e-81 304.7 175 82.9
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 4.6e-81 304.7 170 84.7
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 4.6e-81 304.7 170 85.3
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.0e-80 303.5 170 84.7
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.3e-80 303.1 173 82.7
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.3e-80 303.1 172 82.0
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.3e-80 303.1 165 87.3
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.7e-80 302.8 172 82.0
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.7e-80 302.8 174 84.5
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 2.3e-80 302.4 192 79.2
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 3.9e-80 301.6 170 84.7
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-80 301.2 173 82.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 8.7e-80 300.4 171 81.9
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.1e-79 300.1 173 82.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.5e-79 298.9 165 87.3
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.5e-79 298.9 171 82.5
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.5e-79 298.9 171 82.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 5.6e-79 297.7 165 86.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.6e-79 297.7 165 86.1
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 9.6e-79 297.0 159 88.1
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 4.8e-78 294.7 165 85.5
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 6.2e-78 294.3 165 84.2
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.2e-78 294.3 173 78.0
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 8.1e-78 293.9 170 80.0
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 8.1e-78 293.9 173 77.5
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 8.1e-78 293.9 160 88.8
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.1e-77 293.5 170 82.4
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.4e-77 293.1 173 80.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.8e-77 292.7 170 80.6
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.8e-77 292.7 170 81.8
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-77 292.4 170 80.0
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.4e-77 292.4 159 86.8
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.1e-77 292.0 174 78.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-77 290.8 170 79.4
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 6.9e-77 290.8 171 81.9
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 6.9e-77 290.8 170 82.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 6.9e-77 290.8 157 88.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 9.0e-77 290.4 175 78.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 9.0e-77 290.4 170 84.1
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.5e-76 289.7 170 78.8
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.0e-76 289.3 168 79.2
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.0e-76 289.3 171 82.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.0e-76 289.3 170 80.6
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.4e-76 288.5 170 78.2
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 3.4e-76 288.5 166 83.7
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 4.4e-76 288.1 170 78.2
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 4.4e-76 288.1 171 78.9
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 4.4e-76 288.1 171 78.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-76 288.1 168 79.2
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.8e-76 287.7 174 77.6
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 7.6e-76 287.3 170 78.2
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 9.9e-76 287.0 170 78.2
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 9.9e-76 287.0 162 83.3
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.3e-75 286.6 174 77.6
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.7e-75 286.2 170 80.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.2e-75 285.8 174 79.3
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 2.2e-75 285.8 166 83.1
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.9e-75 285.4 170 80.0
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.8e-75 285.0 170 77.6
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.8e-75 285.0 170 77.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 4.9e-75 284.6 171 78.4
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 4.9e-75 284.6 174 79.3
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.1e-74 283.5 166 81.3
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.1e-74 283.5 158 86.7
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.4e-74 283.1 171 77.8
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.9e-74 282.7 173 79.8
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.9e-74 282.7 173 79.8
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 2.4e-74 282.3 156 86.5
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 2.4e-74 282.3 170 78.8
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.2e-74 282.0 174 78.7
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 4.2e-74 281.6 171 77.2
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 4.2e-74 281.6 171 77.8
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 4.2e-74 281.6 215 67.4
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 4.2e-74 281.6 176 77.8
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-73 279.6 159 83.0
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.7e-73 278.9 160 82.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 3.5e-73 278.5 169 80.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 6.6e-72 274.2 171 78.4
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.5e-71 272.3 155 81.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.5e-71 272.3 166 76.5
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 7.3e-71 270.8 159 80.5
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.3e-70 270.0 170 75.9
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.6e-70 269.6 156 80.8
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.1e-70 269.2 166 79.5
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 6.2e-70 267.7 165 77.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-69 266.9 166 78.3
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.9e-67 258.8 172 73.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 4.9e-67 258.1 159 79.2
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.9e-66 256.1 169 72.8
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.2e-66 255.4 247 55.9
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 9.3e-66 253.8 142 85.2
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.1e-63 246.9 140 82.9
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.8e-62 242.3 166 67.5
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 5.3e-61 238.0 177 63.3
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 2.6e-60 235.7 170 63.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 5.8e-60 234.6 170 70.6
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.1e-58 230.3 171 63.2
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-49 198.7 134 73.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 8.7e-48 194.1 167 55.7
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 4.5e-44 181.8 161 59.6
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.7e-41 172.6 92 89.1
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.4e-36 155.6 92 81.5
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 5.0e-35 151.8 106 68.9
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.0e-32 144.1 169 43.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.6e-31 139.4 80 83.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 2.6e-28 129.4 179 36.9
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.0e-24 117.5 69 79.7
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-23 114.0 68 77.9
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-23 114.0 68 77.9
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 9.7e-23 110.9 100 59.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.8e-22 108.6 54 92.6
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 5.3e-21 105.1 51 96.1
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.0e-20 103.2 57 80.7
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 6.5e-19 98.2 165 35.2
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.7e-17 92.8 165 35.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.6e-17 92.4 54 79.6
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.6e-15 86.3 55 72.7
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.3e-14 81.3 90 48.9
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 1.3e-11 73.9 45 75.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.7e-11 73.6 51 70.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.8e-11 72.4 59 62.7
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 5.0e-11 72.0 88 46.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 7.2e-10 68.2 38 86.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-08 63.9 50 62.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 2.3e-08 63.2 35 77.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 2.0e-07 60.1 42 64.3
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 2.0e-07 60.1 30 86.7


User provided reference genes

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