Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.2e-123 445.7 228 100.0
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 6.9e-85 317.8 229 72.9
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 3.4e-84 315.5 228 73.2
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.6e-84 314.3 227 73.1
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.4e-82 310.1 241 67.6
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 3.2e-82 308.9 241 68.0
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.2e-82 308.5 242 68.6
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.2e-81 307.0 241 67.2
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.6e-81 306.6 228 72.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-81 306.2 229 72.1
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.7e-81 305.8 241 65.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 3.5e-81 305.4 240 67.5
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.3e-80 303.5 241 67.2
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.3e-80 303.5 238 66.8
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.9e-80 302.0 241 65.6
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.9e-80 302.0 235 68.5
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.7e-80 301.2 241 66.4
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 6.7e-80 301.2 241 66.4
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.5e-79 300.1 241 66.0
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.3e-79 298.9 241 65.6
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.3e-79 298.9 234 65.4
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.6e-78 296.6 240 65.4
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 2.2e-78 296.2 241 65.6
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 2.8e-78 295.8 238 66.0
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.7e-78 295.4 243 65.8
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 3.7e-78 295.4 241 64.3
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 6.3e-78 294.7 237 65.8
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.1e-77 293.9 240 65.4
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 1.1e-77 293.9 240 65.4
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.1e-77 293.9 237 65.8
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-77 293.9 237 65.8
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.1e-77 293.9 237 65.8
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.1e-77 293.9 237 65.8
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.8e-77 293.1 238 65.1
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.4e-77 292.7 243 65.4
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.4e-77 292.7 235 64.7
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 4.1e-77 292.0 241 64.7
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 4.1e-77 292.0 241 64.7
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 5.3e-77 291.6 237 65.4
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.3e-77 291.6 229 67.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 5.3e-77 291.6 241 63.9
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 5.3e-77 291.6 242 64.9
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 6.9e-77 291.2 237 64.6
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 6.9e-77 291.2 241 63.9
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 6.9e-77 291.2 241 63.9
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 9.0e-77 290.8 237 65.0
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 9.0e-77 290.8 239 66.1
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.5e-76 290.0 237 64.6
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.5e-76 290.0 238 65.1
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.0e-76 289.7 242 64.9
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.6e-76 289.3 234 65.4
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 2.6e-76 289.3 235 64.7
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 2.6e-76 289.3 241 63.9
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.4e-76 288.9 241 63.9
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.5e-76 288.5 242 64.9
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 7.7e-76 287.7 241 64.7
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.0e-75 287.3 234 65.0
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.3e-75 287.0 243 64.2
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 1.7e-75 286.6 234 65.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.7e-75 286.6 240 66.7
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 2.9e-75 285.8 241 63.9
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.0e-75 285.0 238 64.3
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 8.5e-75 284.3 230 65.7
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.1e-74 283.9 241 63.1
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.9e-74 283.1 236 65.7
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.9e-74 283.1 240 62.1
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.2e-74 282.3 238 65.1
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 7.2e-74 281.2 241 62.7
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.1e-73 279.6 241 63.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 7.9e-73 277.7 241 62.7
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 1.4e-72 276.9 232 64.7
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 3.0e-72 275.8 235 62.6
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 8.8e-72 274.2 229 65.5
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.5e-71 273.5 242 61.2
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.5e-71 272.7 254 59.4
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.5e-71 272.7 242 61.2
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 4.3e-71 271.9 238 62.2
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 5.7e-71 271.6 234 63.2
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 7.4e-71 271.2 237 62.4
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.7e-70 268.9 241 60.6
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 4.8e-70 268.5 235 60.9
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 8.2e-70 267.7 283 54.8
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.4e-69 266.9 238 61.8
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.8e-69 266.5 246 59.8
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 1.8e-69 266.5 240 61.2
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 5.9e-68 261.5 235 59.6
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 8.5e-67 257.7 242 57.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 8.5e-67 257.7 238 60.9
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.5e-66 256.1 238 60.5
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.0e-64 250.8 243 58.0
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.4e-64 250.4 235 59.6
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 2.3e-64 249.6 216 63.4
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 6.7e-64 248.1 238 59.7
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.5e-63 246.9 238 58.4
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.5e-63 246.9 245 57.6
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 4.4e-63 245.4 227 63.0
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.8e-62 242.7 207 63.8
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 2.8e-62 242.7 243 58.4
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 6.3e-62 241.5 236 57.6
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.4e-61 240.4 235 57.9
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.4e-61 240.4 209 63.2
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.3e-61 238.4 231 58.0
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.3e-59 233.8 218 60.6
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.3e-59 233.8 237 54.9
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.3e-59 233.8 238 58.4
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.1e-58 230.7 244 53.3
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 4.7e-57 225.3 235 58.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 4.7e-57 225.3 235 58.7
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.4e-56 223.8 232 56.9
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 1.4e-56 223.8 298 47.3
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 1.4e-56 223.8 227 59.5
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.0e-55 219.9 241 52.7
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 3.3e-55 219.2 235 55.3
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-53 214.2 238 57.1
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.1e-53 214.2 238 57.1
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.8e-53 213.4 236 54.7
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.4e-53 213.0 238 57.1
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.5e-52 208.8 238 55.5
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 2.9e-51 206.1 234 50.0
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 3.8e-51 205.7 211 59.7
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 2.5e-50 203.0 232 54.7
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.4e-48 197.2 199 57.8
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 4.4e-47 192.2 181 59.1
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 4.4e-47 192.2 212 55.2
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.6e-44 183.7 262 41.6
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.2e-42 175.6 129 69.0
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.6e-35 151.4 102 75.5
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.1e-33 146.7 134 64.9
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.7e-30 137.1 220 44.1
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.4e-29 134.0 65 93.8
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 2.8e-25 119.8 125 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.8e-24 117.1 251 34.3
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 1.5e-23 114.0 141 42.6
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.0e-23 113.6 148 45.9
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.3e-19 100.9 123 41.5
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.7e-19 100.5 112 45.5
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 8.6e-19 98.2 146 37.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.6e-18 95.5 125 42.4
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 4.6e-12 75.9 35 88.6
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.3e-11 73.6 112 51.8
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.2e-09 65.5 88 42.0
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.4e-08 64.3 27 96.3
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 2.3e-08 63.5 26 100.0
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.1e-08 63.2 27 92.6
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 5.2e-08 62.4 26 96.2
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 5.2e-08 62.4 26 96.2
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 5.8e-07 58.9 97 40.2


User provided reference genes

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