Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.8e-151 539.3 283 100.0
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.5e-121 439.9 281 83.6
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.1e-119 433.7 276 82.2
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 7.2e-108 394.4 278 74.1
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.7e-107 391.7 269 74.0
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 8.0e-107 391.0 282 72.0
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.0e-106 390.6 281 72.6
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 4.0e-106 388.7 280 71.8
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 5.2e-106 388.3 281 70.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 5.2e-106 388.3 278 72.7
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.2e-106 388.3 277 72.6
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.2e-105 387.1 278 72.7
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 5.7e-105 384.8 280 71.4
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 7.5e-105 384.4 284 69.4
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 7.5e-105 384.4 276 72.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.7e-104 383.3 277 71.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.8e-104 382.5 260 73.5
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 4.8e-104 381.7 279 69.9
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.1e-103 380.6 280 70.4
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 2.4e-103 379.4 278 70.1
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.4e-103 379.4 242 77.7
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.1e-103 379.0 261 71.3
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.1e-103 378.6 258 74.8
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 5.3e-103 378.3 242 77.3
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 5.3e-103 378.3 299 66.6
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-102 377.1 264 73.5
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.0e-102 376.3 278 69.1
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.7e-102 375.9 279 69.5
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.7e-102 375.9 282 70.2
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.7e-102 375.9 277 69.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 3.5e-102 375.6 278 69.1
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 7.7e-102 374.4 270 70.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.0e-101 374.0 282 70.6
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.3e-101 373.6 269 69.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.7e-101 373.2 262 72.1
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.7e-101 373.2 265 72.1
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.9e-101 372.5 288 70.1
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.5e-100 370.2 270 70.0
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-100 369.8 282 67.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.9e-100 369.8 277 68.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.9e-100 369.8 251 74.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.5e-100 369.4 303 64.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 4.2e-100 368.6 269 70.3
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.2e-100 368.6 261 71.3
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 5.5e-100 368.2 277 67.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.5e-100 368.2 269 70.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 7.2e-100 367.9 257 72.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.1e-99 366.3 248 74.6
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 2.7e-99 365.9 281 68.0
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 3.6e-99 365.5 264 69.7
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 4.7e-99 365.2 258 71.7
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.0e-98 364.0 279 69.2
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.4e-98 363.6 238 75.6
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.4e-98 363.6 280 66.8
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.8e-98 363.2 258 71.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.3e-98 362.8 289 66.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.3e-98 362.8 261 69.7
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.3e-98 362.8 271 67.9
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 3.0e-98 362.5 249 74.3
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-98 362.1 252 72.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 4.0e-98 362.1 258 70.9
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 4.0e-98 362.1 273 70.3
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-97 360.5 283 67.5
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-97 360.5 224 80.4
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.5e-97 360.1 223 78.9
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 2.0e-97 359.8 260 70.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.6e-97 359.4 274 69.3
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.4e-97 359.0 283 66.1
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 4.4e-97 358.6 278 66.9
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.4e-97 358.6 268 69.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 7.5e-97 357.8 252 71.8
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 7.5e-97 357.8 252 71.8
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 4.8e-96 355.1 279 64.5
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 8.3e-96 354.4 301 62.1
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.4e-95 353.6 257 68.9
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 7.0e-95 351.3 298 61.7
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.7e-94 349.4 221 76.9
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.0e-93 347.4 254 69.7
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 8.6e-93 344.4 256 68.4
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.1e-92 344.0 253 69.6
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 4.0e-90 335.5 281 63.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.3e-88 330.5 236 69.1
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 6.3e-88 328.2 269 65.1
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 8.3e-88 327.8 250 66.8
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 4.1e-87 325.5 231 69.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 1.6e-86 323.6 267 63.7
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 2.0e-86 323.2 282 62.1
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.0e-86 323.2 224 74.6
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 5.9e-86 321.6 248 68.5
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 8.6e-85 317.8 298 58.4
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.5e-84 317.0 214 73.8
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.1e-83 313.2 197 78.2
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-81 306.2 252 64.3
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.4e-80 301.6 194 76.3
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.6e-78 297.0 326 53.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 6.0e-78 295.0 264 60.6
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 3.0e-77 292.7 198 72.2
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 4.3e-76 288.9 173 80.3
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-75 286.2 209 70.8
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.8e-75 286.2 234 63.2
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.0e-73 280.0 277 56.7
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.1e-71 274.2 191 69.6
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 5.4e-71 271.9 280 56.4
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.7e-70 269.6 176 76.7
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.9e-69 265.8 253 59.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 6.8e-66 255.0 257 52.1
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.3e-60 236.1 258 48.4
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.8e-58 230.3 223 56.5
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 8.9e-58 228.0 229 49.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 2.0e-57 226.9 252 47.6
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-50 203.8 197 55.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.9e-49 198.0 167 58.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-46 191.0 276 45.7
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.2e-39 166.4 132 67.4
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.3e-37 161.0 221 44.8
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.4e-31 140.2 92 72.8
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 6.7e-29 132.1 98 68.4
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 2.1e-27 127.1 177 46.3
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-24 117.1 113 59.3
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-24 115.5 89 61.8
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 9.3e-23 111.7 78 70.5
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.1e-22 110.5 166 41.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 7.9e-22 108.6 77 71.4
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 5.1e-21 105.9 177 40.7
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 8.2e-19 98.6 116 47.4
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 9.0e-18 95.1 59 76.3
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-17 94.0 78 60.3
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 2.5e-15 87.0 195 35.4
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 1.6e-14 84.3 232 31.5
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.8e-13 80.9 50 72.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.8e-13 80.9 93 49.5
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 5.1e-13 79.3 102 44.1
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-12 77.8 192 37.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-12 77.8 192 37.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 2.5e-12 77.0 89 49.4
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-12 76.3 56 66.1
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-12 76.3 56 66.1
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 9.7e-12 75.1 55 65.5
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.2e-11 73.9 49 67.3
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.1e-10 70.1 59 52.5
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.5e-09 67.8 93 41.9
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.9e-09 65.9 47 70.2
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.7e-08 64.3 239 22.2
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.7e-08 64.3 228 25.0
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.9e-08 63.5 74 54.1
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.4e-07 61.2 221 23.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.1e-06 57.4 86 46.5
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 4.7e-06 56.2 220 21.4
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 7.9e-06 55.5 215 19.5
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 7.9e-06 55.5 221 22.6


User provided reference genes

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