Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.3e-140 503.1 256 100.0
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 6.3e-119 431.0 252 88.9
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.7e-114 415.6 254 84.3
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.4e-102 375.9 254 74.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.4e-102 375.9 254 74.0
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 5.3e-102 374.8 251 74.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 7.0e-102 374.4 251 74.1
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.6e-101 373.2 249 73.5
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 2.7e-101 372.5 251 73.7
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 5.9e-101 371.3 251 73.7
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 7.7e-101 370.9 251 74.1
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.9e-100 369.0 254 72.8
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 5.0e-100 368.2 251 71.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 5.0e-100 368.2 251 71.7
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 6.5e-100 367.9 249 72.3
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 6.5e-100 367.9 250 71.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.5e-99 366.7 252 71.0
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.5e-99 366.7 251 73.7
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 2.5e-99 365.9 251 73.3
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 4.2e-99 365.2 251 71.7
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 7.2e-99 364.4 251 71.7
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.2e-98 363.6 252 71.8
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.0e-98 360.9 257 69.6
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 8.0e-98 360.9 251 70.9
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.8e-97 359.8 251 71.3
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 4.0e-97 358.6 251 70.5
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 6.8e-97 357.8 251 72.9
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 8.8e-97 357.5 251 72.9
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.2e-96 357.1 250 70.4
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 1.2e-96 357.1 251 70.9
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 2.0e-96 356.3 253 71.9
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.0e-96 356.3 251 68.9
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 3.4e-96 355.5 251 68.1
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 9.8e-96 354.0 249 71.9
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.7e-95 353.2 251 69.3
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.7e-95 353.2 251 70.5
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.2e-95 352.8 251 70.5
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 3.7e-95 352.1 251 70.9
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 4.8e-95 351.7 250 71.2
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 8.3e-95 350.9 251 71.7
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.1e-94 350.5 251 68.5
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 1.1e-94 350.5 254 70.9
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.1e-94 350.5 250 70.8
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.1e-94 350.5 251 69.7
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.4e-94 350.1 252 69.4
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.8e-94 349.7 251 71.3
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.4e-94 349.4 255 66.7
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 4.1e-94 348.6 251 68.9
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 4.1e-94 348.6 254 69.7
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 5.4e-94 348.2 250 70.4
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 9.1e-94 347.4 251 70.9
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 1.6e-93 346.7 249 69.9
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 2.7e-93 345.9 284 61.6
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 3.5e-93 345.5 251 70.1
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 4.5e-93 345.1 251 70.5
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 5.9e-93 344.7 251 69.3
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 7.7e-93 344.4 254 69.3
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 7.7e-93 344.4 251 69.7
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.7e-92 343.2 251 68.9
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.3e-92 342.8 251 69.3
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.3e-92 342.8 254 67.3
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 3.8e-92 342.0 249 69.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 5.0e-92 341.7 249 69.5
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 6.6e-92 341.3 251 69.7
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 8.6e-92 340.9 251 68.5
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 8.6e-92 340.9 251 69.7
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 4.2e-91 338.6 254 66.5
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 9.5e-91 337.4 249 69.5
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.3e-89 332.8 251 65.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.0e-89 332.4 249 66.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 6.8e-89 331.3 254 67.7
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.2e-88 330.5 251 68.9
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 2.6e-88 329.3 251 68.9
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.4e-88 328.6 254 66.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 9.8e-88 327.4 251 68.5
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.1e-86 323.9 251 66.9
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 1.1e-86 323.9 251 65.3
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 1.8e-86 323.2 207 74.9
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.8e-86 323.2 228 69.7
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.5e-85 318.5 257 63.8
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.3e-84 317.0 254 64.2
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 3.3e-83 312.4 254 62.6
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.2e-82 310.5 251 61.8
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.5e-80 303.5 251 64.9
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.5e-80 303.5 217 69.6
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.5e-80 303.5 217 69.6
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-78 297.4 251 63.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 5.4e-78 295.0 202 72.3
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 7.0e-78 294.7 252 61.9
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.1e-75 287.3 251 57.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 2.5e-75 286.2 210 66.7
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.1e-73 280.8 250 60.0
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.8e-73 280.0 250 56.0
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.2e-73 278.5 253 59.7
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.5e-72 276.9 249 55.4
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 9.2e-70 267.7 245 55.1
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.6e-61 238.8 269 48.7
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 8.6e-60 234.6 250 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.5e-59 233.0 250 47.2
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.0e-56 223.4 253 45.5
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.6e-51 205.3 240 45.4
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 5.3e-49 198.7 231 45.5
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.5e-48 197.2 238 41.2
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.4e-48 196.1 247 41.7
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.2e-46 189.1 249 42.2
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 3.3e-43 179.5 191 51.8
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 5.8e-40 168.7 254 40.9
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 5.6e-35 152.1 206 44.2
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 5.3e-33 145.6 95 73.7
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 4.2e-30 136.0 154 50.6
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.9e-28 129.4 128 53.1
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 8.2e-26 121.7 81 74.1
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 1.4e-22 110.9 132 48.5
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 4.6e-21 105.9 99 54.5
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 3.9e-20 102.8 78 67.9
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 1.9e-19 100.5 155 40.0
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 1.9e-19 100.5 155 40.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.3e-19 99.8 225 28.0
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.1e-17 94.7 131 43.5
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.4e-17 94.4 296 25.0
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.4e-12 77.8 51 68.6
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 2.2e-10 70.5 82 50.0
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.0e-08 63.9 49 65.3
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.8e-07 59.7 42 66.7


User provided reference genes

Program Settings