Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 3.9e-304 1047.3 533 100.0
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.6e-220 768.8 537 75.4
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 4.5e-220 768.1 536 75.0
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.1e-213 745.3 536 72.2
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 4.5e-212 741.5 536 73.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 1.0e-208 730.3 534 72.5
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 3.7e-174 615.5 541 60.6
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.7e-158 563.5 545 57.4
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.8e-158 562.4 565 54.0
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 4.2e-157 558.9 545 56.7
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.1e-156 556.6 554 54.9
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 1.0e-155 554.3 540 54.6
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 6.6e-155 551.6 541 55.8
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 9.0e-152 541.2 540 55.4
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.9e-150 535.4 540 52.6
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 4.2e-149 532.3 541 53.4
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 7.1e-149 531.6 537 54.6
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 7.9e-148 528.1 512 55.3
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 5.5e-141 505.4 541 51.0
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 2.7e-140 503.1 505 52.1
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.8e-139 500.4 543 51.7
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 3.9e-139 499.2 537 51.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.9e-138 496.9 458 58.3
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 1.3e-137 494.2 537 51.4
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 3.1e-136 489.6 552 49.3
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.0e-136 489.2 533 49.0
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 6.9e-136 488.4 566 49.6
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 4.5e-135 485.7 539 51.8
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.0e-134 484.6 540 50.4
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.7e-134 483.8 540 52.2
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 5.5e-133 478.8 536 46.8
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 2.1e-132 476.9 526 51.9
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 3.0e-131 473.0 537 46.7
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 6.7e-131 471.9 540 49.1
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 2.8e-129 466.5 543 49.4
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 3.7e-129 466.1 541 47.9
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.5e-127 460.7 544 48.3
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 5.9e-127 458.8 543 49.5
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 6.5e-126 455.3 543 49.4
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.4e-125 454.1 543 49.2
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 3.6e-124 449.5 521 48.9
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.3e-123 446.8 541 48.2
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 3.0e-123 446.4 540 47.8
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.0e-123 446.4 540 48.5
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 2.5e-122 443.4 537 46.2
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 3.3e-122 443.0 542 46.9
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 4.8e-121 439.1 539 46.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 6.3e-121 438.7 546 46.2
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.4e-120 437.6 536 46.5
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 3.1e-120 436.4 540 45.6
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 6.9e-120 435.3 558 47.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 9.1e-120 434.9 545 45.7
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 9.1e-120 434.9 541 45.8
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.5e-119 434.1 549 46.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.5e-119 432.6 548 45.3
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.0e-118 431.4 546 45.6
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.9e-118 429.9 552 45.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.5e-118 428.7 545 45.7
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 6.5e-118 428.7 540 45.4
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.1e-117 427.9 537 45.1
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.9e-117 427.2 546 45.2
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.9e-117 427.2 546 45.2
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 3.2e-117 426.4 544 46.0
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.5e-117 425.6 566 44.2
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.2e-116 424.5 540 45.2
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.1e-116 423.7 567 44.6
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 1.8e-115 420.6 542 45.8
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 5.7e-114 415.6 553 43.2
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.3e-113 414.5 539 45.1
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 2.8e-113 413.3 530 44.7
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.8e-113 413.3 540 45.6
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 3.7e-113 412.9 540 46.1
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 4.8e-113 412.5 539 42.9
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 8.2e-113 411.8 540 45.7
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 7.0e-112 408.7 610 41.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 2.6e-111 406.8 542 44.6
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 7.7e-111 405.2 531 45.0
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 4.2e-109 399.4 537 44.1
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.1e-108 397.1 561 43.1
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 6.1e-108 395.6 539 42.5
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.3e-107 393.7 517 45.1
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 6.7e-107 392.1 535 43.9
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 4.8e-105 386.0 391 54.2
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 8.2e-105 385.2 543 41.4
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.8e-104 384.0 536 43.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 9.1e-104 381.7 541 41.0
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.2e-103 381.3 542 40.8
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.2e-103 381.3 542 40.8
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.6e-103 380.9 536 41.0
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-103 380.6 540 40.9
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.6e-103 380.2 542 40.6
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 2.6e-103 380.2 541 42.5
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 4.5e-103 379.4 390 54.1
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.3e-102 377.9 538 40.1
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 5.0e-102 375.9 540 41.3
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.9e-101 374.0 544 39.7
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.5e-101 373.6 540 41.1
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.6e-100 370.9 541 39.6
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.7e-100 370.2 542 40.6
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.1e-100 369.0 678 37.8
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.3e-97 361.3 545 39.8
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.3e-97 361.3 537 38.5
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 3.7e-97 359.8 569 39.0
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 3.7e-97 359.8 541 40.5
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 2.0e-95 354.0 547 42.0
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 4.5e-95 352.8 545 38.2
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.7e-95 352.1 534 41.2
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.7e-94 350.9 448 45.1
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 1.5e-93 347.8 336 56.2
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.2e-92 344.7 491 42.4
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.0e-91 339.7 569 37.4
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 5.2e-91 339.3 539 39.5
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 5.2e-91 339.3 360 56.4
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 5.2e-91 339.3 571 37.3
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 5.0e-86 322.8 470 41.7
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 5.5e-85 319.3 426 44.1
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 8.0e-76 288.9 540 35.4
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 9.8e-74 282.0 286 55.2
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 1.9e-72 277.7 543 34.1
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.7e-71 273.9 270 58.1
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 1.7e-70 271.2 405 42.2
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.6e-70 269.2 338 44.7
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 4.9e-65 253.1 214 59.8
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 2.7e-63 247.3 378 41.5
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.3e-61 240.0 268 47.4
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.6e-61 239.6 351 43.3
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.2e-60 238.4 449 36.1
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.9e-57 227.3 500 32.8
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.6e-55 221.5 458 34.5
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.0e-54 217.2 249 47.8
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.8e-49 200.3 155 61.9
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.6e-37 159.8 165 47.3
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.4e-35 155.2 238 39.9
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 7.9e-31 139.4 155 42.6
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.8e-30 138.3 155 43.2
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 7.4e-29 132.9 136 52.2
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 1.6e-28 131.7 150 42.0
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.1e-27 129.0 136 47.8
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 3.1e-27 127.5 218 34.4
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 1.2e-26 125.6 662 23.4
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.6e-26 124.4 193 38.3
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.3e-22 112.1 96 65.6
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 3.9e-22 110.5 152 42.1
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 2.5e-21 107.8 187 31.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.1e-20 104.8 173 38.2
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.4e-19 102.1 534 22.1
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.8e-17 94.0 282 28.7
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.7e-09 68.6 207 30.0
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 7.9e-07 59.7 105 35.2


User provided reference genes

Program Settings