Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 4.4e-175 617.8 309 100.0
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 8.3e-134 480.7 325 78.8
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 9.9e-127 457.2 315 74.0
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.3e-126 456.8 309 73.8
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.3e-126 456.8 309 73.8
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 1.3e-126 456.8 316 74.1
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 1.4e-125 453.4 315 74.0
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 9.3e-125 450.7 268 80.6
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.6e-124 449.9 309 72.8
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.7e-124 449.1 268 80.6
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.8e-124 447.6 268 80.2
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 1.0e-123 447.2 268 80.2
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 1.0e-123 447.2 280 77.9
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 6.6e-123 444.5 277 78.3
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 6.6e-123 444.5 268 79.9
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 8.7e-123 444.1 276 79.3
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 2.5e-122 442.6 277 77.3
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 5.6e-122 441.4 277 76.9
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 5.6e-122 441.4 263 81.4
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.3e-121 440.3 282 77.0
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 2.1e-121 439.5 294 74.8
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 8.1e-121 437.6 281 76.9
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 2.4e-120 436.0 266 80.5
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 5.3e-120 434.9 279 76.7
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 5.3e-120 434.9 275 77.1
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 6.9e-120 434.5 314 70.7
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 9.0e-120 434.1 280 77.5
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 2.6e-119 432.6 271 79.0
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 2.6e-119 432.6 277 76.9
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 3.4e-119 432.2 328 68.9
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 9.9e-119 430.6 284 73.9
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 2.2e-118 429.5 265 79.6
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 2.9e-118 429.1 266 78.6
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 2.9e-118 429.1 270 77.8
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 3.8e-118 428.7 274 76.6
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 4.9e-118 428.3 271 76.8
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 8.4e-118 427.6 291 72.9
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 1.1e-117 427.2 266 78.6
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 1.9e-117 426.4 297 70.0
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.9e-117 426.4 273 75.8
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 3.2e-117 425.6 262 78.6
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 5.4e-117 424.9 281 75.1
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 7.1e-117 424.5 258 79.1
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 7.1e-117 424.5 280 75.4
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 1.2e-116 423.7 261 80.5
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 1.6e-116 423.3 281 79.7
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 2.1e-116 422.9 255 80.0
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 3.5e-116 422.2 259 78.8
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 3.5e-116 422.2 284 73.6
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 7.9e-116 421.0 272 76.1
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 7.9e-116 421.0 312 67.3
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.3e-115 420.2 256 79.3
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 8.7e-115 417.5 308 68.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 8.7e-115 417.5 260 77.3
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 1.9e-114 416.4 329 67.8
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 4.3e-114 415.2 317 67.2
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 1.4e-112 410.2 270 74.8
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 1.8e-112 409.8 263 75.3
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 2.4e-112 409.5 268 73.5
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 5.3e-112 408.3 271 73.4
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 2.0e-111 406.4 291 70.4
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 5.8e-111 404.8 272 72.8
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 5.8e-111 404.8 266 75.9
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 2.2e-110 402.9 265 74.7
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 3.8e-110 402.1 268 73.9
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 4.9e-110 401.7 249 77.9
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.1e-109 400.6 271 71.6
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 3.2e-109 399.1 267 74.5
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 7.1e-109 397.9 271 72.0
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 9.3e-109 397.5 253 77.1
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 2.7e-108 396.0 288 69.1
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 1.0e-107 394.0 271 70.8
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 5.1e-107 391.7 271 70.5
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 8.7e-107 391.0 271 70.8
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 9.0e-104 380.9 226 81.4
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 1.3e-102 377.1 261 70.1
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 3.0e-99 365.9 245 71.8
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 9.6e-98 360.9 237 77.2
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 1.5e-95 353.6 271 66.1
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 1.7e-94 350.1 258 63.6
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 1.9e-93 346.7 203 79.8
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.8e-91 340.1 213 75.1
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 6.7e-91 338.2 233 70.8
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 1.9e-90 336.7 319 59.9
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 4.8e-89 332.0 273 59.0
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 2.2e-81 306.6 250 57.2
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 2.1e-76 290.0 245 58.0
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 7.9e-76 288.1 218 62.8
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 4.0e-67 259.2 256 56.6
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 4.0e-67 259.2 256 56.6
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 1.3e-62 244.2 153 78.4
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.1e-61 241.1 174 73.0
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 2.5e-61 240.0 165 72.7
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 2.2e-54 216.9 278 46.0
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 6.5e-54 215.3 135 71.1
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 4.7e-52 209.1 250 48.4
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.3e-46 191.0 273 41.8
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.6e-42 176.8 302 35.8
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 2.2e-41 173.7 137 67.2
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 5.4e-40 169.1 112 74.1
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 6.6e-38 162.2 98 78.6
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.3e-35 153.7 79 86.1
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 4.9e-25 119.4 275 31.6
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.4e-24 117.9 269 31.2
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 2.1e-23 114.0 109 52.3
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.9e-21 107.5 73 75.3
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 6.2e-20 102.4 89 58.4
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 7.6e-18 95.5 95 57.9
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 4.4e-10 69.7 296 27.0
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.9e-09 67.0 343 25.4
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 4.9e-09 66.2 347 26.5
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 4.9e-09 66.2 300 26.3
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.4e-09 65.9 280 26.4
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.1e-08 65.1 327 27.2
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.1e-08 65.1 334 26.3
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.4e-08 64.7 284 26.4
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.4e-08 64.7 284 26.4
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.4e-08 64.7 284 26.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 3.2e-08 63.5 323 25.4
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.2e-08 63.5 280 27.9
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 4.2e-08 63.2 284 27.1
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 5.4e-08 62.8 284 26.8
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 5.4e-08 62.8 340 25.9
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 9.3e-08 62.0 339 25.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.2e-07 61.6 275 25.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.6e-07 61.2 334 26.6
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.6e-07 61.2 285 26.3
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.1e-07 60.8 285 25.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 2.7e-07 60.5 321 25.2
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 2.7e-07 60.5 284 25.0
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.7e-07 60.5 352 25.0
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.7e-07 60.5 284 26.4
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.7e-07 60.5 282 26.2
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 7.8e-07 58.9 323 24.1
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.0e-06 58.5 285 25.3
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.3e-06 58.2 320 24.1
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.7e-06 57.8 261 24.5
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 2.3e-06 57.4 348 24.7
vmacro14221 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 2.3e-06 57.4 45 66.7
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 8.7e-06 55.5 285 25.6


User provided reference genes

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