Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.1e-142 510.0 255 100.0
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 5.5e-83 311.6 267 65.9
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.2e-77 293.9 262 60.3
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 3.5e-69 265.8 269 58.4
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.6e-66 256.9 273 52.7
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 7.5e-64 248.1 274 52.2
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 8.1e-50 201.4 243 51.4
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.1e-37 160.2 287 40.8
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 7.8e-37 158.3 286 37.4
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.3e-36 157.5 290 39.7
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 1.9e-35 153.7 282 36.9
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.5e-35 153.3 307 37.8
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.6e-34 150.6 305 38.0
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 2.4e-33 146.7 307 37.5
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.1e-33 146.4 301 37.5
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.0e-33 146.0 297 39.1
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.2e-32 144.4 311 37.9
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 2.0e-32 143.7 300 36.0
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 2.0e-32 143.7 276 35.9
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.0e-32 143.7 301 37.5
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 5.8e-32 142.1 310 35.5
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.2e-31 140.2 282 37.2
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 2.9e-31 139.8 286 39.2
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 3.8e-31 139.4 288 37.5
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 3.8e-31 139.4 298 37.6
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.9e-30 137.1 303 36.6
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.4e-30 136.7 290 37.6
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 7.1e-30 135.2 302 36.8
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 7.1e-30 135.2 302 36.8
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 9.3e-30 134.8 287 37.3
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.2e-29 134.4 317 36.9
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 6.0e-29 132.1 284 36.3
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 6.0e-29 132.1 274 40.5
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 7.9e-29 131.7 274 40.5
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.0e-28 131.3 274 36.1
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.3e-28 131.0 279 35.5
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.7e-28 130.6 290 36.9
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.3e-28 130.2 262 36.6
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.3e-28 130.2 285 38.9
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 3.0e-28 129.8 302 35.1
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.6e-28 128.6 287 39.7
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 6.6e-28 128.6 315 37.1
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 6.6e-28 128.6 292 34.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 8.7e-28 128.3 284 32.7
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.5e-27 127.5 296 30.7
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.5e-27 127.5 281 40.6
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.5e-27 127.5 302 35.4
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.3e-27 126.3 181 46.4
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.3e-27 126.3 181 46.4
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 3.3e-27 126.3 262 35.5
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 5.6e-27 125.6 263 34.6
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.3e-27 125.2 276 35.1
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 9.6e-27 124.8 282 31.9
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 2.1e-26 123.6 276 36.2
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.8e-26 123.2 297 35.0
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.6e-26 122.9 293 33.8
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.8e-26 122.5 303 37.0
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.4e-25 120.9 281 33.1
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.4e-25 120.9 196 40.8
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.4e-25 120.9 281 33.1
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 1.8e-25 120.6 294 33.7
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.8e-25 120.6 278 32.0
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 2.4e-25 120.2 301 35.2
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.4e-25 120.2 269 35.3
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 2.4e-25 120.2 275 36.4
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 6.9e-25 118.6 260 33.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 6.9e-25 118.6 270 38.9
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 9.0e-25 118.2 283 31.1
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 1.2e-24 117.9 283 31.1
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.2e-24 117.9 272 33.8
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 2.0e-24 117.1 285 35.1
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 2.6e-24 116.7 276 35.1
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 3.4e-24 116.3 295 36.3
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 3.4e-24 116.3 226 35.8
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 5.8e-24 115.5 279 32.3
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 7.6e-24 115.2 233 35.6
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.3e-23 114.4 294 33.3
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.3e-23 114.4 193 38.3
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.9e-23 113.2 212 40.6
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.9e-23 113.2 302 34.4
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 6.4e-23 112.1 303 34.0
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 8.4e-23 111.7 300 30.7
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.4e-22 110.9 294 35.4
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.4e-22 110.2 309 31.1
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.2e-22 109.8 167 42.5
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 4.2e-22 109.4 197 36.5
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 5.4e-22 109.0 303 32.7
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.4e-22 109.0 285 36.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 5.4e-22 109.0 308 29.9
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 4.6e-21 105.9 272 32.0
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.3e-20 104.4 250 34.0
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.9e-20 102.8 290 30.7
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.7e-20 102.1 270 37.0
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 6.7e-20 102.1 289 32.5
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 8.7e-20 101.7 308 34.1
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.9e-19 100.5 113 45.1
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 3.3e-19 99.8 294 33.0
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 4.3e-19 99.4 216 34.7
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 7.4e-19 98.6 184 37.5
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 9.6e-19 98.2 294 33.7
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.3e-18 97.8 293 32.8
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.3e-18 97.8 291 32.3
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 2.1e-18 97.1 284 34.5
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.1e-18 97.1 276 30.4
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.1e-18 97.1 238 36.1
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.8e-18 96.7 254 31.9
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 4.8e-18 95.9 193 35.2
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 8.1e-18 95.1 297 31.6
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.1e-17 94.7 266 30.1
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-17 94.7 266 31.6
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.1e-17 94.7 288 28.8
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.1e-17 94.7 256 33.6
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.4e-17 94.4 196 36.7
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.4e-17 94.4 294 32.0
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-17 94.0 198 35.4
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 4.0e-17 92.8 295 33.2
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 5.3e-17 92.4 91 53.8
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 6.9e-17 92.0 195 35.4
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 9.0e-17 91.7 262 32.4
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-16 91.3 196 37.2
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.5e-16 90.9 162 37.7
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.5e-16 90.9 268 31.7
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-16 90.9 282 29.8
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.5e-16 90.9 174 36.8
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.5e-16 90.9 267 32.2
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.0e-16 90.5 185 35.7
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 2.0e-16 90.5 288 28.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 2.6e-16 90.1 288 28.1
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 2.6e-16 90.1 292 31.2
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 3.4e-16 89.7 260 28.5
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 4.5e-16 89.4 280 30.4
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 4.5e-16 89.4 280 30.4
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 4.5e-16 89.4 280 30.4
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 4.5e-16 89.4 280 30.4
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 7.6e-16 88.6 236 35.2
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 7.6e-16 88.6 283 29.3
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 7.6e-16 88.6 200 38.0
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 7.6e-16 88.6 294 30.3
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.0e-15 88.2 274 32.8
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-15 87.8 156 39.7
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-15 87.8 292 28.1
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.7e-15 87.4 286 33.2
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.7e-15 87.4 195 32.8
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.7e-15 87.4 303 30.0
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.2e-15 87.0 274 29.2
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-15 86.7 193 32.6
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.9e-15 86.7 295 29.5
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 8.4e-15 85.1 269 30.9
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-14 84.7 277 31.4
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.4e-14 84.3 175 33.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-14 84.3 288 27.1
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-14 84.3 271 31.4
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.4e-14 84.3 271 31.4
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 1.4e-14 84.3 272 30.9
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-14 84.0 155 38.7
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.9e-14 84.0 145 37.9
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 1.9e-14 84.0 265 32.8
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 2.5e-14 83.6 193 36.3
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.2e-14 83.2 261 33.0
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 5.5e-14 82.4 195 33.8
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.3e-12 77.0 142 31.7
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 3.9e-12 76.3 265 30.6
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 5.1e-12 75.9 290 31.4
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 5.1e-12 75.9 157 35.7
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.9e-11 73.9 89 47.2
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.5e-11 73.6 279 30.5
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 7.4e-11 72.0 164 34.8
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-10 71.2 129 38.8
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.1e-10 70.5 271 29.5
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 2.4e-09 67.0 278 27.7
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.9e-09 65.5 266 28.2
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 9.0e-09 65.1 92 40.2
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.0e-08 63.9 283 28.3
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 4.5e-08 62.8 225 28.4
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.7e-07 60.8 276 28.3
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 5.0e-07 59.3 196 32.1
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.2e-06 56.6 71 45.1
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 4.2e-06 56.2 91 39.6
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 5.5e-06 55.8 104 36.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 7.2e-06 55.5 74 41.9


User provided reference genes

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