Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 0.0e+00 1354.7 882 100.0
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.4e-165 587.0 754 49.7
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 9.9e-164 581.6 778 52.1
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 3.2e-146 523.5 686 50.9
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.4e-125 454.1 704 41.5
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.6e-119 434.1 651 44.2
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.7e-118 430.3 713 39.7
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.1e-114 418.7 690 41.9
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.2e-110 404.4 719 39.1
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 2.5e-106 391.0 699 41.5
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 3.2e-106 390.6 714 39.6
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 6.1e-105 386.3 688 39.0
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.3e-104 384.4 696 40.8
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 4.4e-103 380.2 701 39.9
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.4e-101 375.2 680 37.4
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.9e-99 367.5 774 35.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.5e-98 365.2 760 38.0
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.4e-95 353.6 668 33.7
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 5.7e-95 353.2 659 35.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 7.5e-95 352.8 685 34.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.8e-94 350.9 716 36.9
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.1e-93 349.0 673 40.0
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.4e-93 348.6 673 40.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.4e-93 347.8 673 40.0
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 2.0e-92 344.7 689 37.9
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 5.9e-92 343.2 685 37.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 4.3e-90 337.0 674 36.2
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.5e-90 335.9 651 34.7
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.6e-89 335.1 696 37.9
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.7e-89 333.6 669 37.1
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.0e-88 330.5 653 34.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 4.0e-88 330.5 754 36.6
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 4.4e-87 327.0 699 37.1
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.9e-86 324.3 801 36.1
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.7e-86 323.9 673 35.4
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.4e-86 323.2 679 36.7
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.7e-83 315.1 676 37.7
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 3.0e-83 314.3 660 34.2
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 3.9e-83 313.9 740 34.5
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.5e-82 311.2 676 37.1
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.5e-82 311.2 693 36.9
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 6.2e-81 306.6 871 31.6
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.1e-80 305.8 695 34.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.4e-80 305.4 714 34.9
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.2e-80 303.5 674 34.3
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.8e-80 303.1 690 36.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 7.5e-79 299.7 704 33.1
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 9.8e-79 299.3 657 35.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.7e-78 298.5 739 34.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 3.2e-77 294.3 752 35.8
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 7.0e-77 293.1 774 30.2
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.1e-76 291.6 727 34.9
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 2.1e-76 291.6 682 34.0
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.7e-76 291.2 675 31.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.5e-76 290.8 693 35.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 3.5e-76 290.8 703 33.6
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 6.0e-76 290.0 752 34.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.0e-75 289.3 827 30.7
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 3.0e-75 287.7 724 34.1
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.1e-74 285.8 697 34.0
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 3.3e-74 284.3 672 32.1
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 9.5e-74 282.7 709 32.6
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.6e-73 282.0 749 34.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.4e-72 278.9 766 30.8
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.8e-72 278.5 697 31.4
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.3e-72 278.1 716 31.3
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.5e-71 275.4 690 32.0
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.4e-71 274.2 723 33.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-70 272.3 708 32.2
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.7e-70 270.8 657 30.4
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.9e-70 270.4 809 31.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.1e-69 267.3 687 31.3
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 5.4e-69 266.9 702 32.8
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 7.1e-69 266.5 680 31.8
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 7.1e-69 266.5 696 32.3
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 9.2e-69 266.2 687 32.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 2.7e-68 264.6 886 29.0
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 3.5e-68 264.2 680 31.9
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.5e-68 264.2 687 32.9
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 6.0e-68 263.5 687 32.8
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.3e-67 261.5 765 30.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 3.0e-67 261.2 682 31.2
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.5e-66 258.1 672 32.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.3e-66 257.3 667 33.1
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.5e-66 256.1 680 30.4
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.5e-66 256.1 691 31.8
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.6e-65 255.4 657 31.7
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 8.1e-65 253.1 600 31.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.8e-64 251.9 707 28.9
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-62 245.7 778 30.6
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.7e-62 245.4 670 30.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.4e-61 240.4 687 29.5
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.1e-61 240.0 696 30.9
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 7.1e-61 240.0 696 28.9
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.1e-60 238.4 725 29.1
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.1e-60 238.4 710 29.3
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 3.5e-60 237.7 754 29.8
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.6e-60 237.3 719 29.2
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.0e-60 236.9 673 30.0
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.7e-59 235.3 719 29.1
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.7e-59 235.3 672 32.7
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.9e-59 234.2 813 27.3
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 5.1e-59 233.8 788 29.9
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 8.7e-59 233.0 798 30.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 5.6e-58 230.3 798 26.7
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 9.6e-58 229.6 745 32.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.8e-57 228.0 646 29.3
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.4e-56 225.7 726 29.5
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 5.4e-45 187.2 649 26.2
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.1e-45 186.8 666 28.4
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 6.0e-44 183.7 662 26.7
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 7.9e-44 183.3 521 35.3
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 9.6e-42 176.4 389 36.0
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.8e-41 174.9 291 39.5
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.0e-40 171.0 644 25.8
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 8.4e-38 163.3 201 42.8
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.2e-37 161.4 456 37.1
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 7.1e-37 160.2 230 40.4
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.6e-36 159.1 265 38.1
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.8e-35 155.6 205 38.5
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.5e-34 151.8 629 25.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 3.4e-31 141.4 202 38.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-28 132.9 180 37.8
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.3e-27 129.4 236 35.2
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 4.3e-26 124.4 275 33.8
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.8e-25 120.9 146 43.2
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 7.7e-23 113.6 138 47.8
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.1e-21 109.8 414 30.7
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.5e-18 99.4 170 36.5
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 9.7e-18 96.7 128 39.1
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.5e-15 89.4 280 29.6
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 7.7e-15 87.0 120 38.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 1.1e-13 83.2 298 27.5
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.5e-13 82.0 249 30.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 7.9e-12 77.0 297 26.3
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 2.8e-09 68.6 209 27.8
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 6.3e-09 67.4 71 53.5


User provided reference genes

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