Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 2.3e-63 245.7 155 100.0
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 5.3e-36 154.8 91 91.2
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 7.9e-32 141.0 91 84.6
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 9.6e-30 134.0 91 78.0
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.3e-29 133.7 88 83.0
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 2.1e-29 132.9 88 80.7
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 2.8e-29 132.5 88 79.5
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 3.7e-29 132.1 88 80.7
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 6.2e-29 131.3 88 78.4
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 8.1e-29 131.0 88 78.4
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 8.1e-29 131.0 88 78.4
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.1e-28 130.6 91 76.9
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.1e-28 130.6 91 76.9
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.1e-28 130.6 91 76.9
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.1e-28 130.6 89 77.5
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.1e-28 130.6 89 77.5
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.1e-28 130.6 88 80.7
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.4e-28 130.2 88 78.4
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.4e-28 130.2 88 78.4
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 1.4e-28 130.2 88 80.7
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 1.8e-28 129.8 88 79.5
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 1.8e-28 129.8 91 75.8
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.8e-28 129.8 88 79.5
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 3.1e-28 129.0 88 77.3
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 3.1e-28 129.0 108 68.5
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 4.0e-28 128.6 88 79.5
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 4.0e-28 128.6 88 76.1
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 4.0e-28 128.6 90 75.6
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 4.0e-28 128.6 88 77.3
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 4.0e-28 128.6 88 77.3
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 4.0e-28 128.6 88 77.3
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 5.3e-28 128.3 88 76.1
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 5.3e-28 128.3 88 76.1
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 5.3e-28 128.3 88 76.1
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 5.3e-28 128.3 88 78.4
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 5.3e-28 128.3 88 76.1
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 5.3e-28 128.3 88 77.3
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 6.9e-28 127.9 88 76.1
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 6.9e-28 127.9 88 76.1
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 6.9e-28 127.9 88 78.4
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 6.9e-28 127.9 90 76.7
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 9.0e-28 127.5 89 77.5
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 75.0
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 77.3
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 9.0e-28 127.5 88 78.4
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 77.3
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 78.4
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 78.4
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 78.4
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 78.4
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 78.4
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 1.2e-27 127.1 88 77.3
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.5e-27 126.7 88 76.1
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.5e-27 126.7 88 77.3
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 1.5e-27 126.7 88 77.3
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 2.0e-27 126.3 88 75.0
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 2.0e-27 126.3 88 76.1
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 2.0e-27 126.3 91 74.7
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 2.0e-27 126.3 88 76.1
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 2.0e-27 126.3 88 72.7
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.6e-27 125.9 88 76.1
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 3.4e-27 125.6 88 77.3
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 3.4e-27 125.6 88 76.1
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.4e-27 125.6 88 76.1
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 4.5e-27 125.2 88 73.9
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 4.5e-27 125.2 88 72.7
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 5.8e-27 124.8 88 75.0
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 5.8e-27 124.8 88 77.3
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 5.8e-27 124.8 88 76.1
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 7.6e-27 124.4 88 76.1
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.0e-26 124.0 88 76.1
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.0e-26 124.0 88 72.7
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 1.0e-26 124.0 88 72.7
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 1.3e-26 123.6 89 71.9
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 1.3e-26 123.6 88 72.7
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 1.7e-26 123.2 89 76.4
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 2.2e-26 122.9 88 75.0
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 2.9e-26 122.5 91 72.5
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 2.9e-26 122.5 88 76.1
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.8e-26 122.1 88 75.0
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 3.8e-26 122.1 88 75.0
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 4.9e-26 121.7 88 71.6
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 6.5e-26 121.3 88 73.9
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 8.4e-26 120.9 88 73.9
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 1.1e-25 120.6 88 73.9
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.4e-25 120.2 88 67.0
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 1.9e-25 119.8 86 73.3
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 2.5e-25 119.4 88 75.0
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 3.2e-25 119.0 88 71.6
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.2e-25 118.6 88 71.6
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 7.1e-25 117.9 88 71.6
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 7.1e-25 117.9 88 68.2
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 9.3e-25 117.5 88 67.0
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 1.6e-24 116.7 111 60.4
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 2.1e-24 116.3 88 71.6
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 2.7e-24 115.9 94 71.3
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 4.6e-24 115.2 88 71.6
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 4.6e-24 115.2 88 70.5
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 6.0e-24 114.8 88 68.2
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 6.0e-24 114.8 95 67.4
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 6.0e-24 114.8 88 67.0
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 7.9e-24 114.4 89 69.7
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 7.9e-24 114.4 89 70.8
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 7.9e-24 114.4 88 72.7
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 1.0e-23 114.0 91 68.1
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 1.0e-23 114.0 89 68.5
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.3e-23 113.6 88 69.3
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 1.8e-23 113.2 95 68.4
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.3e-23 112.8 88 68.2
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 2.3e-23 112.8 86 69.8
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 3.9e-23 112.1 88 70.5
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 8.7e-23 110.9 90 67.8
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 1.9e-22 109.8 90 65.6
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 2.5e-22 109.4 89 67.4
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 2.5e-22 109.4 89 67.4
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 3.3e-22 109.0 89 67.4
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 9.6e-22 107.5 88 67.0
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 2.8e-21 105.9 104 57.7
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 6.2e-21 104.8 81 70.4
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 8.2e-21 104.4 89 65.2
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 1.4e-20 103.6 93 61.3
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.0e-20 102.1 88 60.2
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 4.0e-20 102.1 94 59.6
vmacro21831 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 2.6e-19 99.4 128 50.0
PSO210G7820 Papaver somniferum HOM05D003234 ORTHO05D003635 3.4e-19 99.0 86 62.8
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 7.6e-19 97.8 67 73.1
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 2.2e-18 96.3 88 62.5
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 5.0e-18 95.1 182 38.5
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 8.4e-18 94.4 86 62.8
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 6.7e-15 84.7 88 54.5
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 6.3e-13 78.2 87 54.0
Peaxi162Scf00064g01012 Petunia axillaris HOM05D003234 ORTHO05D003635 1.4e-12 77.0 67 62.7
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 5.3e-12 75.1 93 45.2
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 1.2e-11 73.9 87 49.4
Sabra02G0010200 Salix brachista HOM05D003234 ORTHO05D003635 2.2e-10 69.7 51 72.5
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 1.4e-09 67.0 71 50.7
TAR376G0434 Trochodendron aralioides HOM05D003234 ORTHO05D003635 1.4e-09 67.0 53 71.7
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.5e-09 66.2 96 39.6
BcaC08g45540 Brassica carinata HOM05D003234 ORTHO05D003635 3.2e-09 65.9 51 68.6
BolC6t38341H Brassica oleracea HOM05D003234 ORTHO05D003635 3.2e-09 65.9 51 68.6
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 2.1e-08 63.2 94 41.5
COL.COLO4_21608 Corchorus olitorius HOM05D003234 ORTHO05D003635 2.1e-08 63.2 36 80.6
CARHR069740 Cardamine hirsuta HOM05D003234 ORTHO05D003635 4.6e-08 62.0 45 75.6
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.6e-08 62.0 65 52.3
BraA07t31705Z Brassica rapa HOM05D003234 ORTHO05D003635 7.9e-08 61.2 50 66.0
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 1.0e-07 60.8 88 37.5
Rhsim07G0254000 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.0e-07 60.8 36 77.8
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 1.4e-07 60.5 88 42.0
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.4e-07 60.5 90 38.9
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.8e-07 60.1 94 37.2
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 2.3e-07 59.7 88 40.9
Mapoly0075s0049 Marchantia polymorpha HOM05D003234 ORTHO05D003635 6.7e-07 58.2 89 41.6
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 8.8e-07 57.8 88 36.4
Ah.00g000460 Amaranthus hybridus HOM05D003234 ORTHO05D003635 1.1e-06 57.4 34 76.5
Dinv39576 Davidia involucrata HOM05D003234 ORTHO05D003635 4.3e-06 55.5 48 60.4
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 5.7e-06 55.1 94 37.2
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 5.7e-06 55.1 88 36.4


User provided reference genes

Program Settings