Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 9.2e-295 1016.1 514 100.0
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 5.1e-261 904.0 514 88.5
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.8e-240 834.7 507 82.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.0e-205 718.4 516 70.2
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 7.7e-201 704.1 515 68.0
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.9e-200 702.2 514 68.3
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.0e-197 693.7 512 68.9
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.5e-196 689.9 515 67.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.8e-195 685.6 513 68.6
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.8e-194 682.9 514 67.3
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 3.1e-194 682.2 514 66.3
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 3.1e-194 682.2 514 67.3
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.0e-194 681.0 514 68.3
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 9.1e-194 680.6 514 68.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.2e-193 680.2 515 67.2
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 2.7e-193 679.1 516 67.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 3.5e-193 678.7 511 67.1
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 3.5e-193 678.7 514 66.7
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.3e-192 676.8 514 66.9
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.3e-192 676.0 524 66.6
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 2.3e-192 676.0 511 65.8
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.9e-192 675.6 516 67.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 5.5e-191 671.4 512 65.4
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 9.5e-191 670.6 514 65.4
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.8e-190 669.1 479 68.5
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.7e-190 668.3 534 64.8
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 6.1e-190 667.9 516 66.1
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.0e-189 667.2 511 64.6
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.0e-189 667.2 514 65.6
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.4e-189 666.8 506 66.0
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.8e-189 666.4 524 65.3
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.2e-189 664.8 514 67.3
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.5e-188 663.3 515 65.2
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.5e-188 663.3 509 65.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.6e-188 662.5 511 66.1
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.7e-187 659.8 577 60.1
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.2e-187 659.4 514 65.8
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.2e-187 659.4 515 65.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.2e-187 659.4 511 64.4
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.3e-187 657.9 487 67.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.1e-186 657.1 515 66.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.4e-186 656.8 511 65.9
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.8e-186 656.4 506 64.6
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 4.1e-186 655.2 512 65.2
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 4.1e-186 655.2 513 65.5
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 7.0e-186 654.4 516 64.5
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 9.2e-186 654.1 514 65.4
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-185 653.7 510 64.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.7e-185 652.5 512 64.6
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.5e-185 652.1 506 64.8
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.5e-185 651.7 514 65.0
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.8e-185 651.0 512 64.6
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.9e-184 649.0 515 64.1
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 6.6e-184 647.9 513 63.4
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 6.6e-184 647.9 514 65.0
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 2.5e-183 646.0 512 63.7
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.5e-183 646.0 506 63.8
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-183 644.8 438 72.8
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 5.6e-183 644.8 506 64.6
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 7.3e-183 644.4 592 56.9
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 6.1e-182 641.3 510 62.9
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 8.0e-182 641.0 510 62.9
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.4e-181 640.2 509 63.7
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.8e-181 639.8 516 64.0
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.1e-181 639.0 513 62.6
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 5.2e-181 638.3 548 60.9
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 5.2e-181 638.3 510 64.3
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.0e-180 636.3 514 64.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 9.8e-180 634.0 514 65.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.7e-179 633.3 516 63.8
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.7e-179 632.1 511 62.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.7e-179 632.1 511 62.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.4e-178 630.2 510 63.1
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.9e-178 629.8 470 66.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.9e-178 629.8 470 66.8
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.2e-178 629.0 515 62.7
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.1e-178 628.6 470 66.8
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 4.1e-178 628.6 515 62.9
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.1e-178 628.6 470 66.8
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.6e-177 626.7 514 62.3
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.6e-177 625.2 510 63.3
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 6.0e-177 624.8 463 67.0
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.3e-176 622.9 461 68.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.0e-176 622.5 436 70.6
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 8.6e-176 620.9 515 61.9
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 9.5e-175 617.5 505 62.8
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.8e-174 615.9 498 63.3
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.1e-173 612.5 509 60.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.6e-172 609.4 546 59.2
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 3.4e-172 609.0 499 61.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.8e-172 607.4 514 60.7
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 3.2e-170 602.4 509 59.5
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 7.1e-170 601.3 469 63.1
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.2e-169 600.5 513 60.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 6.0e-169 598.2 430 67.4
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 7.8e-169 597.8 514 61.7
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 7.3e-167 591.3 464 63.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.2e-164 583.9 506 60.7
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 7.6e-164 581.3 462 63.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.9e-162 576.6 526 58.0
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.3e-160 570.5 428 66.4
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.2e-156 557.4 449 62.6
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.7e-155 553.5 461 60.7
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-149 533.9 370 72.2
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 3.2e-146 522.7 414 65.2
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.6e-145 520.4 381 68.5
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.3e-144 516.5 485 54.6
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 5.6e-143 511.9 355 70.4
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 4.2e-138 495.7 470 56.4
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.7e-126 456.1 448 54.7
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.1e-122 444.5 493 48.3
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.0e-120 438.0 383 59.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 2.2e-115 420.2 467 48.6
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.9e-114 417.2 440 50.7
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-112 411.4 390 58.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-109 401.4 374 56.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.6e-105 387.5 504 45.4
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.2e-96 355.9 323 59.4
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.3e-94 351.3 276 63.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 3.6e-81 306.6 422 45.7
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 4.9e-78 296.2 460 38.5
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 2.0e-71 274.2 461 37.3
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.2e-65 255.0 244 58.2
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.2e-65 255.0 447 38.3
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.0e-60 237.7 370 38.4
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.1e-57 227.6 168 66.7
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 7.5e-55 219.2 156 69.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 7.8e-52 209.1 489 31.9
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.2e-39 168.7 207 41.1
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 7.6e-39 166.0 246 41.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-32 144.8 92 76.1
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.0e-32 142.5 102 66.7
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.0e-27 129.0 126 57.9
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.1e-24 117.5 344 26.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.9e-22 110.9 111 55.9
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.0e-16 90.5 59 74.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 4.3e-10 70.5 44 65.9
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-09 68.9 66 62.1
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 2.1e-09 68.2 49 67.3


User provided reference genes

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