Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 3.4e-220 768.5 528 100.0
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.8e-105 386.7 520 51.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.2e-89 332.0 494 50.2
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 4.7e-76 289.7 528 44.1
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 3.4e-66 256.9 514 39.5
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.2e-63 248.4 510 44.1
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.7e-62 244.6 518 38.6
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.0e-59 233.4 525 39.0
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.4e-56 224.2 533 36.8
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.0e-54 218.8 516 36.4
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 5.0e-54 216.5 519 38.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 9.5e-53 212.2 475 34.9
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.8e-52 210.7 461 45.6
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 6.1e-52 209.5 470 36.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.0e-50 204.5 515 37.5
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.6e-50 204.1 512 37.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.7e-50 203.0 523 36.7
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 5.7e-50 203.0 537 38.5
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.9e-49 199.9 536 33.0
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 8.3e-49 199.1 552 37.1
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 8.3e-49 199.1 481 34.3
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.4e-48 196.4 468 34.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.9e-46 190.7 526 35.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 5.0e-46 189.9 518 36.1
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 5.0e-46 189.9 518 36.1
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.1e-45 188.7 514 35.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.3e-45 187.2 234 48.7
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.3e-45 186.8 459 34.4
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 8.0e-44 182.6 563 35.9
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.4e-43 181.8 526 33.7
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.0e-43 180.3 508 36.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 5.2e-43 179.9 482 35.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.6e-42 177.6 234 50.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.4e-40 171.8 274 47.8
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.4e-40 171.8 233 48.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 3.2e-40 170.6 533 32.3
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.6e-39 168.3 522 44.3
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.0e-39 167.9 519 33.1
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.7e-39 167.5 277 49.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.7e-39 167.5 525 32.6
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 6.0e-39 166.4 542 34.3
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.3e-38 165.2 482 47.5
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.7e-38 164.9 496 46.8
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 2.3e-38 164.5 555 33.5
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.3e-38 164.5 510 33.9
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 5.0e-38 163.3 482 45.0
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.1e-37 162.2 521 33.8
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.1e-37 162.2 505 40.8
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-37 161.4 284 45.4
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.9e-37 161.4 274 47.4
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.9e-37 161.4 514 33.9
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.9e-37 161.4 522 32.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 9.5e-37 159.1 462 32.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.1e-36 157.9 462 31.4
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 3.6e-36 157.1 272 47.1
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 6.2e-36 156.4 278 46.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 6.2e-36 156.4 266 46.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 3.1e-35 154.1 275 46.5
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.1e-35 154.1 494 32.4
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 6.8e-35 152.9 268 45.1
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 8.9e-35 152.5 268 48.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 8.9e-35 152.5 270 46.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.5e-34 151.8 480 32.7
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.5e-34 151.8 268 47.4
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 2.0e-34 151.4 475 30.7
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 2.0e-34 151.4 475 30.7
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.4e-34 150.2 274 46.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.4e-34 150.2 562 31.9
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 7.5e-34 149.4 520 32.9
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.7e-33 147.1 469 32.6
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 3.7e-33 147.1 479 35.7
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 4.9e-33 146.7 272 46.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 8.3e-33 146.0 491 32.2
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 8.3e-33 146.0 555 41.3
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.2e-32 144.1 234 41.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.2e-32 144.1 234 41.0
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.2e-32 144.1 233 42.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 3.2e-32 144.1 510 31.6
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 4.1e-32 143.7 198 46.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 7.1e-32 142.9 489 29.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.6e-31 141.7 235 45.1
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.5e-31 140.6 530 36.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 4.6e-31 140.2 569 35.0
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 7.8e-31 139.4 564 31.4
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 7.8e-31 139.4 241 43.6
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.3e-30 137.9 265 44.2
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.3e-30 137.9 238 44.1
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.9e-30 137.1 463 33.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 5.1e-30 136.7 507 32.1
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 8.6e-30 136.0 337 40.7
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 8.6e-30 136.0 524 29.6
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.1e-29 135.6 513 33.5
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.5e-29 135.2 548 29.6
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.5e-29 134.4 536 46.1
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 4.3e-29 133.7 531 33.3
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.3e-29 133.7 537 46.2
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 5.6e-29 133.3 329 41.3
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 5.6e-29 133.3 551 29.2
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-28 132.1 227 43.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 3.6e-28 130.6 228 43.0
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.6e-28 130.6 537 32.2
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 4.7e-28 130.2 240 45.0
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 6.2e-28 129.8 520 41.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 6.2e-28 129.8 517 42.7
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 8.1e-28 129.4 527 33.4
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.1e-28 129.4 385 32.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.1e-27 129.0 194 55.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.8e-27 128.3 477 37.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.2e-26 125.6 241 43.2
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-26 125.2 381 31.5
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.6e-26 124.4 226 41.2
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 2.6e-26 124.4 519 29.3
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 3.4e-26 124.0 579 37.3
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.7e-25 121.7 519 36.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 2.2e-25 121.3 519 37.6
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.7e-25 120.6 241 46.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.1e-24 119.0 545 37.1
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.1e-24 119.0 517 43.3
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.1e-24 119.0 519 31.2
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 3.2e-24 117.5 479 28.6
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 4.1e-24 117.1 449 42.3
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.2e-23 115.5 511 43.1
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.1e-23 114.8 235 43.4
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.7e-23 114.4 529 38.4
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.8e-23 112.8 242 43.4
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.3e-22 112.1 234 37.2
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 3.0e-22 110.9 530 27.4
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 6.6e-22 109.8 251 36.7
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.5e-21 108.6 542 34.5
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.8e-20 104.4 519 30.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.4e-18 97.4 502 26.7
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 3.4e-18 97.4 520 26.3
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 5.8e-18 96.7 196 39.3
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 7.6e-18 96.3 190 41.6
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.9e-18 95.9 477 25.4
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.7e-17 95.1 227 36.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.9e-17 94.4 272 40.4
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.9e-16 91.7 152 41.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.4e-16 91.3 223 33.2
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.4e-16 91.3 505 28.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-15 89.0 221 36.7
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.7e-14 85.1 155 41.9
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.0e-14 84.3 131 39.7
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 3.0e-14 84.3 179 39.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.1e-14 83.6 458 26.2
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.5e-13 82.0 234 35.0
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.9e-13 81.6 564 34.4
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.3e-13 80.5 462 26.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.6e-13 80.1 468 24.1
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 5.6e-13 80.1 510 25.7
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.1e-12 78.2 217 34.6
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.1e-12 78.2 234 34.2
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.1e-12 78.2 167 38.3
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 4.8e-12 77.0 138 53.6
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.1e-12 76.3 84 56.0
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.4e-11 74.7 163 35.0
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.0e-11 73.9 84 54.8
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 4.0e-11 73.9 204 34.3
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 9.0e-11 72.8 439 24.8
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.2e-10 72.4 215 32.6
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 2.0e-10 71.6 215 32.6
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.6e-10 71.2 148 34.5
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.4e-10 70.5 533 30.2
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-09 68.9 202 32.7
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.2e-09 68.2 232 29.7
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 8.4e-09 66.2 142 37.3
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 8.4e-09 66.2 81 46.9
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 1.4e-08 65.5 128 36.7
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.4e-08 64.7 101 41.6
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 7.9e-07 59.7 136 30.9
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.3e-06 58.2 479 34.2
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.3e-06 58.2 131 35.1
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 6.6e-06 56.6 160 35.6
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 8.7e-06 56.2 139 30.2


User provided reference genes

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