Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 0.0e+00 1893.2 943 100.0
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 0.0e+00 1351.7 993 70.6
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 0.0e+00 1236.9 961 67.7
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 0.0e+00 1098.2 981 58.3
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 6.5e-312 1073.9 983 58.2
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 3.5e-308 1061.6 981 57.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.1e-304 1050.0 988 56.3
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 4.0e-304 1048.1 979 56.2
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 6.0e-300 1034.2 1003 55.9
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.7e-294 1016.1 989 54.9
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 1.9e-293 1012.7 987 54.0
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.1e-292 1009.2 987 54.8
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 3.0e-291 1005.4 990 54.9
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.4e-288 996.5 1027 53.1
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 6.9e-288 994.2 971 55.0
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.3e-286 989.9 990 54.3
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 6.4e-286 987.6 1158 48.6
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.6e-284 983.0 995 53.8
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 1.6e-284 983.0 991 52.7
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 7.8e-284 980.7 985 54.2
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.3e-281 973.4 987 53.7
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 4.8e-281 971.5 994 53.7
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 6.2e-281 971.1 985 52.9
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.5e-279 964.9 988 53.1
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.3e-278 963.4 972 53.9
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 2.7e-276 955.7 1003 52.4
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 3.5e-276 955.3 998 51.9
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 3.9e-275 951.8 992 52.6
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 6.7e-275 951.0 987 53.6
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.1e-274 950.3 977 52.9
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 1.6e-273 946.4 983 52.8
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.7e-270 936.4 951 52.9
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 3.2e-269 932.2 988 51.7
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.6e-268 929.9 985 51.2
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.1e-266 923.7 984 50.2
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 1.6e-265 919.8 984 50.1
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 2.8e-265 919.1 945 53.2
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.4e-264 916.8 1066 49.2
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.5e-263 913.3 989 51.3
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 3.4e-263 912.1 1050 50.5
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 4.5e-263 911.8 1021 49.7
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.0e-262 910.6 1070 48.0
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 8.7e-259 897.5 970 50.7
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 2.5e-258 896.0 981 52.1
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 2.8e-257 892.5 980 51.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 2.8e-257 892.5 985 49.7
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 2.8e-257 892.5 1009 48.7
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 7.2e-253 877.9 1003 49.4
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 2.1e-252 876.3 1001 49.3
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.4e-251 873.6 884 55.5
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 6.7e-251 871.3 999 50.1
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.1e-250 870.5 968 49.7
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 3.3e-250 869.0 1001 48.6
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 1.3e-249 867.1 995 49.2
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 1.7e-249 866.7 965 49.2
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 4.1e-248 862.1 1012 49.5
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 9.1e-248 860.9 1101 45.6
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.3e-246 857.1 1050 47.3
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 2.2e-246 856.3 994 48.3
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 2.5e-245 852.8 941 51.5
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 6.1e-244 848.2 995 48.3
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 6.7e-243 844.7 986 48.8
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 2.0e-242 843.2 994 48.1
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.3e-241 840.5 995 48.2
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 1.1e-240 837.4 991 47.7
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 1.1e-240 837.4 1002 47.6
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 1.7e-238 830.1 991 46.8
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 1.4e-237 827.0 880 53.0
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 5.7e-234 815.1 988 46.1
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 1.9e-229 800.0 787 53.1
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 8.8e-227 791.2 1014 46.6
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.5e-226 790.4 963 47.8
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.3e-222 777.3 972 46.9
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 5.2e-219 765.4 868 49.9
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 5.4e-216 755.4 1005 43.9
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.7e-215 751.5 964 45.7
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 1.3e-214 750.7 991 44.3
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 5.5e-213 745.3 980 44.7
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 3.9e-206 722.6 990 43.4
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 3.0e-198 696.4 778 47.7
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 6.0e-191 672.2 956 44.6
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.0e-190 671.4 497 68.2
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 2.3e-187 660.2 968 43.0
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 5.6e-181 639.0 1047 40.1
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 5.8e-178 629.0 759 48.2
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 2.5e-173 613.6 733 49.0
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 2.5e-173 613.6 753 48.2
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 1.1e-168 598.2 689 48.9
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 9.3e-168 595.1 937 41.9
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 5.8e-162 575.9 723 46.9
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 3.1e-155 553.5 594 50.3
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 1.9e-152 544.3 821 41.9
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 2.3e-150 537.3 621 49.1
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 2.5e-141 507.3 878 40.8
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 6.5e-137 492.7 1167 30.7
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 8.5e-129 465.7 726 40.1
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 6.1e-127 459.5 489 50.5
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 5.3e-123 446.4 761 34.2
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.6e-119 434.9 621 41.7
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-117 427.9 641 41.2
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 1.7e-108 398.3 258 72.5
CAN.G410.39 Capsicum annuum HOM05D001245 ORTHO05D004475 7.2e-104 382.9 488 46.7
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 4.4e-101 373.6 230 75.7
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 1.7e-100 371.7 227 75.8
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 7.2e-96 356.3 196 81.6
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 8.0e-95 352.8 232 70.3
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 1.3e-84 318.9 375 49.9
CsaV3_4G028030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.3e-84 316.2 376 48.4
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 5.4e-83 313.5 951 28.1
CDE02G2376 Ceratophyllum demersum HOM05D001245 ORTHO05D004475 1.6e-82 312.0 386 45.1
Sc26g0002960 Simmondsia chinensis HOM05D001245 ORTHO05D004475 6.0e-82 310.1 362 50.6
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 1.8e-78 298.5 201 69.7
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 3.4e-77 294.3 184 70.1
Dinv14684 Davidia involucrata HOM05D001245 ORTHO05D004475 8.3e-76 289.7 308 52.6
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 1.9e-75 288.5 195 66.2
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-73 282.3 178 74.2
BcaB04g19399 Brassica carinata HOM05D001245 ORTHO05D004475 1.5e-72 278.9 413 43.1
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 5.8e-69 266.9 863 26.0
HPP92_027721 Vanilla planifolia HOM05D001245 ORTHO05D004475 3.3e-64 251.1 333 46.8
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.2e-60 238.4 208 57.2
Hma1.2p1_1887F.1_g306530 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 3.1e-54 218.0 425 37.9
CsaV3_UNG113870 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.4e-52 209.9 164 59.8
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 2.7e-50 204.9 164 59.1
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-49 201.1 131 75.6
CsaV3_UNG142080 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.4e-44 183.3 151 56.3
CsaV3_4G038030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-43 183.0 150 56.7
SEGI_12378 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 1.0e-41 176.4 416 31.2
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.5e-40 171.8 142 57.7
CsaV3_UNG169310 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.3e-39 169.5 385 34.5
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 2.2e-36 158.7 106 67.9
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.9e-35 155.6 103 75.7
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.5e-35 155.2 99 78.8
Hma1.2p1_0014F.1_g010190 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 4.2e-35 154.5 429 31.5
CsaV3_1G017340 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.5e-35 154.1 136 51.5
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 2.1e-34 152.1 719 24.5
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.8e-33 149.1 102 73.5
Dinv14683 Davidia involucrata HOM05D001245 ORTHO05D004475 1.1e-32 146.4 150 56.0
CsaV3_UNG123970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.3e-32 144.8 98 66.3
CsaV3_UNG178370 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.1e-31 142.1 97 64.9
CsaV3_UNG070580 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.7e-31 141.4 97 64.9
CsaV3_UNG082660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.7e-31 141.4 97 64.9
CsaV3_UNG098730 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-30 139.8 97 64.9
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 6.9e-30 137.1 262 36.6
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 7.6e-29 133.7 194 37.1
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 5.0e-28 131.0 648 24.1
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 9.7e-24 116.7 74 66.2
CsaV3_2G000050 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-22 113.2 115 49.6
CsaV3_UNG169320 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-22 113.2 115 49.6
Actinidia29491 Actinidia chinensis HOM05D001245 ORTHO05D004475 5.9e-21 107.5 148 45.9
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 8.2e-15 87.0 58 63.8
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-14 86.7 58 65.5
CsaV3_5G019970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.3e-14 84.3 76 46.1
Medtr7g091020 Medicago truncatula HOM05D016289 ORTHO05D019268 6.9e-14 84.0 72 52.8
CsaV3_UNG224680 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.5e-13 82.8 97 43.3
CsaV3_UNG224640 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.9e-12 78.6 97 42.3
PRCOL_00000968 Prasinoderma coloniale HOM05D001245 ORTHO05D004475 3.8e-12 78.2 532 22.4
Duzib116G0160 Durio zibethinus HOM05D001245 ORTHO05D004475 2.5e-11 75.5 86 50.0
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.9e-10 70.5 52 71.2
CsaV3_5G018960 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-09 68.9 81 44.4
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 6.7e-09 67.4 47 57.4
Cfa023667 Carpinus fangiana HOM05D001245 ORTHO05D004475 5.7e-08 64.3 128 32.0
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 9.7e-08 63.5 130 27.7
SHI09213 Sapria himalayana HOM05D001245 ORTHO05D004475 3.7e-07 61.6 84 44.0
SEGI_38871 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 8.2e-07 60.5 153 28.8
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 1.1e-06 60.1 186 23.7
C02p34480 Brassica napus HOM05D001245 ORTHO05D004475 1.4e-06 59.7 36 80.6
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.4e-06 59.7 90 35.6
Psat0s9845g0040 Pisum sativum HOM05D001245 ORTHO05D004475 2.4e-06 58.9 216 30.6
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 3.1e-06 58.5 44 65.9
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 5.3e-06 57.8 186 23.1
BolC2t09478H Brassica oleracea HOM05D001245 ORTHO05D004475 7.0e-06 57.4 54 63.0
CsaV3_5G018970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.0e-06 57.4 56 48.2


User provided reference genes

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