Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.7e-51 205.7 101 100.0
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 4.2e-18 94.7 102 55.9
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 2.1e-17 92.4 99 53.5
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 3.6e-17 91.7 89 53.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.1e-17 90.9 99 53.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 6.7e-16 87.4 99 46.5
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.1e-15 86.7 99 47.5
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.4e-15 84.7 99 46.5
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.4e-15 84.7 60 70.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 7.4e-15 84.0 99 47.5
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.3e-14 83.2 99 49.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.7e-14 82.8 99 47.5
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.2e-14 82.4 99 47.5
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.8e-14 82.0 99 49.5
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-13 80.1 99 47.5
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.3e-13 77.8 91 47.3
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.3e-13 77.8 88 47.7
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 5.3e-13 77.8 100 44.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.3e-13 77.8 99 48.5
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.0e-13 77.4 99 47.5
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.1e-13 77.0 89 49.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 9.1e-13 77.0 99 43.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.1e-13 77.0 87 47.1
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.2e-12 76.6 102 46.1
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.6e-12 76.3 89 48.3
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.6e-12 75.5 89 46.1
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-12 75.5 99 45.5
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-12 75.5 87 46.0
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.6e-12 75.5 99 42.4
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.6e-12 75.5 99 47.5
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.5e-12 75.1 100 48.0
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.5e-12 75.1 87 46.0
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.5e-12 74.7 91 46.2
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.5e-12 74.7 91 46.2
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 7.7e-12 73.9 99 45.5
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 7.7e-12 73.9 99 44.4
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 7.7e-12 73.9 99 43.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 7.7e-12 73.9 99 43.4
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.0e-11 73.6 100 47.0
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.0e-11 73.6 87 46.0
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.3e-11 73.2 102 46.1
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.3e-11 73.2 100 45.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 3.8e-11 71.6 63 54.0
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.8e-11 71.6 87 46.0
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.8e-11 71.6 99 44.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.8e-11 71.6 99 44.4
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 5.0e-11 71.2 99 42.4
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.0e-11 71.2 50 62.0
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 5.0e-11 71.2 89 48.3
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 6.5e-11 70.9 87 46.0
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 6.5e-11 70.9 95 43.2
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.5e-11 70.5 87 42.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.1e-10 70.1 91 47.3
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.1e-10 70.1 96 42.7
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.1e-10 70.1 66 51.5
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.1e-10 70.1 91 44.0
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.1e-10 70.1 99 43.4
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.5e-10 69.7 91 47.3
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.5e-10 69.7 103 40.8
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.5e-10 69.7 102 43.1
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.9e-10 69.3 88 47.7
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-10 69.3 87 44.8
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-10 69.3 99 38.4
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.5e-10 68.9 87 43.7
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.5e-10 68.9 87 43.7
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.5e-10 68.9 99 38.4
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.5e-10 68.9 99 43.4
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.2e-10 68.6 88 44.3
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.2e-10 68.6 100 42.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.2e-10 68.2 87 44.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.2e-10 68.2 97 44.3
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.2e-10 68.2 102 46.1
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.2e-10 68.2 88 43.2
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.5e-10 67.8 89 43.8
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.5e-10 67.8 90 46.7
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 5.5e-10 67.8 87 46.0
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.4e-10 67.0 90 40.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.4e-10 67.0 65 50.8
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-09 66.6 92 43.5
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.2e-09 66.6 94 40.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-09 66.6 99 39.4
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.2e-09 66.6 99 40.4
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.6e-09 66.2 95 45.3
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.6e-09 66.2 99 44.4
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.6e-09 66.2 91 42.9
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.1e-09 65.9 92 38.0
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.7e-09 65.5 91 42.9
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 2.7e-09 65.5 36 75.0
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.6e-09 65.1 90 43.3
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.6e-09 65.1 98 38.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.6e-09 65.1 87 35.6
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.7e-09 64.7 88 42.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 4.7e-09 64.7 99 42.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.7e-09 64.7 99 37.4
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 6.1e-09 64.3 97 36.1
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 6.1e-09 64.3 97 36.1
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 8.0e-09 63.9 98 35.7
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 8.0e-09 63.9 98 35.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 8.0e-09 63.9 45 62.2
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.0e-08 63.5 83 48.2
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.4e-08 63.2 89 41.6
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.4e-08 63.2 89 42.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.4e-08 63.2 92 43.5
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.8e-08 62.8 99 43.4
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.8e-08 62.8 90 40.0
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 1.8e-08 62.8 103 40.8
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.8e-08 62.8 92 43.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.8e-08 62.8 88 43.2
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.3e-08 62.4 87 40.2
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.3e-08 62.4 94 39.4
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.3e-08 62.4 99 39.4
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.3e-08 62.4 88 43.2
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.3e-08 62.4 88 46.6
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 3.0e-08 62.0 92 45.7
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 3.0e-08 62.0 86 36.0
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.0e-08 62.0 94 37.2
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.0e-08 61.6 93 35.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 4.0e-08 61.6 49 55.1
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.0e-08 61.6 88 40.9
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.0e-08 61.6 89 43.8
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 5.2e-08 61.2 89 39.3
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.2e-08 61.2 89 43.8
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 6.7e-08 60.8 97 34.0
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 6.7e-08 60.8 99 42.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 6.7e-08 60.8 49 53.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.7e-08 60.8 46 60.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 8.8e-08 60.5 29 82.8
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.8e-08 60.5 100 35.0
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.8e-08 60.5 91 36.3
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-07 60.1 45 62.2
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 93 43.0
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.5e-07 59.7 91 39.6
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-07 59.7 47 51.1
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.5e-07 59.7 91 41.8
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.5e-07 59.7 104 37.5
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.5e-07 59.7 76 42.1
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.6e-07 58.9 40 65.0
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.6e-07 58.9 74 40.5
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.6e-07 58.9 39 61.5
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 3.3e-07 58.5 106 39.6
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.3e-07 58.5 34 70.6
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 3.3e-07 58.5 83 38.6
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 4.4e-07 58.2 94 42.6
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 5.7e-07 57.8 98 38.8
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.7e-07 57.8 89 41.6
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 5.7e-07 57.8 86 41.9
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 7.5e-07 57.4 34 70.6
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.7e-07 57.0 41 61.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 9.7e-07 57.0 50 52.0
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 9.7e-07 57.0 84 46.4
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.3e-06 56.6 35 68.6
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-06 56.6 35 68.6
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.3e-06 56.6 35 68.6
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.7e-06 56.2 52 50.0
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-06 56.2 92 38.0
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 1.7e-06 56.2 100 39.0
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.7e-06 56.2 53 52.8
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.7e-06 56.2 53 52.8
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.2e-06 55.8 89 37.1
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-06 55.8 89 37.1
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-06 55.8 89 37.1
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.2e-06 55.8 38 65.8
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.2e-06 55.8 87 39.1
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.2e-06 55.8 62 48.4
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 2.8e-06 55.5 93 34.4
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.8e-06 55.5 100 41.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 2.8e-06 55.5 65 49.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.7e-06 55.1 89 33.7
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.8e-06 54.7 99 33.3
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.8e-06 54.7 89 39.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.8e-06 54.7 87 32.2
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 4.8e-06 54.7 87 40.2
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 8.2e-06 53.9 93 32.3


User provided reference genes

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