Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.4e-129 465.7 264 100.0
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.5e-72 275.8 274 64.6
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.1e-36 156.4 383 38.1
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.9e-34 149.8 288 40.6
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.2e-33 146.4 263 41.8
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 9.3e-33 144.8 296 40.9
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.7e-31 140.6 284 41.9
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.3e-31 140.2 288 41.3
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.1e-30 137.9 302 38.1
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.1e-30 137.9 292 39.0
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 5.6e-30 135.6 295 39.7
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.6e-30 135.6 275 41.8
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 9.6e-30 134.8 271 45.4
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.3e-29 134.4 297 39.4
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.6e-29 134.0 279 40.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.6e-29 134.0 297 39.1
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.1e-29 133.7 317 35.6
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.1e-29 133.7 279 40.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.6e-29 132.9 301 37.9
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.1e-28 131.3 280 39.3
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.1e-28 131.3 280 39.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-28 131.3 300 39.3
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.8e-28 130.6 300 40.0
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.0e-28 128.3 300 40.7
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.2e-27 127.9 280 38.6
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 2.0e-27 127.1 281 37.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 3.4e-27 126.3 314 35.7
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.4e-27 126.3 314 35.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 3.4e-27 126.3 314 35.7
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 4.5e-27 125.9 304 36.2
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 7.6e-27 125.2 315 33.7
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.9e-27 124.8 305 41.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.9e-27 124.8 299 36.5
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.7e-26 124.0 319 34.2
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 2.2e-26 123.6 252 40.1
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.9e-26 123.2 297 36.7
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 6.4e-26 122.1 280 36.4
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.1e-25 121.3 299 35.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.9e-25 120.6 293 38.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.9e-25 120.6 313 37.7
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.4e-25 120.2 296 35.8
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.4e-25 120.2 309 35.9
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 3.2e-25 119.8 308 38.0
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 7.1e-25 118.6 297 36.4
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.2e-24 117.9 270 36.7
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.1e-24 117.1 295 35.3
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 2.7e-24 116.7 320 36.2
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.7e-24 116.7 304 38.5
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.8e-23 114.0 319 36.1
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.8e-23 114.0 314 35.4
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.3e-23 113.6 288 36.1
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.9e-23 112.8 318 35.2
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 5.1e-23 112.5 277 37.2
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 6.7e-23 112.1 310 35.2
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 6.7e-23 112.1 281 35.9
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 8.7e-23 111.7 267 38.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 8.7e-23 111.7 268 37.3
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.5e-22 110.9 301 32.6
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.5e-22 110.9 283 36.4
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.9e-22 110.5 277 35.4
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-22 110.5 202 41.6
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-22 110.5 202 41.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 3.3e-22 109.8 296 35.1
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 4.3e-22 109.4 204 41.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 4.3e-22 109.4 204 41.7
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 4.3e-22 109.4 281 35.2
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 7.4e-22 108.6 304 35.5
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.3e-21 107.8 242 38.8
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-21 106.3 205 42.0
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-21 106.3 205 42.0
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.8e-21 105.9 286 35.7
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 4.8e-21 105.9 279 40.9
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 6.2e-21 105.5 281 34.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 6.2e-21 105.5 284 36.3
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 8.1e-21 105.1 205 41.5
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 8.1e-21 105.1 303 34.0
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 1.1e-20 104.8 291 37.8
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.1e-20 104.8 302 33.8
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 4.0e-20 102.8 291 35.4
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 4.0e-20 102.8 268 37.3
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.2e-19 101.3 285 34.4
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.5e-19 100.9 284 34.2
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 5.8e-19 99.0 269 36.4
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 7.6e-19 98.6 279 32.6
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 7.6e-19 98.6 273 36.6
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 7.6e-19 98.6 273 36.6
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 7.6e-19 98.6 273 36.6
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.3e-18 97.8 284 36.3
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.7e-18 97.4 298 33.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 1.7e-18 97.4 293 31.1
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.5e-18 95.5 313 34.5
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.5e-17 93.6 186 40.3
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.2e-17 93.2 285 36.8
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 4.2e-17 92.8 278 32.4
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 5.5e-17 92.4 278 32.4
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 5.5e-17 92.4 308 37.0
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 9.3e-17 91.7 276 33.7
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 9.3e-17 91.7 271 33.6
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.2e-16 91.3 269 32.0
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.6e-16 90.9 272 31.6
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.1e-16 90.5 273 33.0
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.1e-16 90.5 255 36.1
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.7e-16 90.1 254 33.9
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 3.5e-16 89.7 216 36.1
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 4.6e-16 89.4 262 34.0
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 7.9e-16 88.6 187 36.4
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.0e-15 88.2 274 32.1
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.3e-15 87.8 203 38.4
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.3e-15 87.8 278 33.1
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 1.3e-15 87.8 277 32.1
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-15 86.7 283 33.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.0e-15 86.7 133 56.4
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 5.1e-15 85.9 272 33.5
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.1e-14 84.7 269 34.2
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.9e-14 84.0 285 36.1
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 2.5e-14 83.6 278 32.4
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 2.5e-14 83.6 277 32.9
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-14 83.6 194 38.7
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.3e-14 83.2 281 33.5
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-14 83.2 191 40.3
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 7.4e-14 82.0 282 31.6
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.1e-13 80.5 276 33.0
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 3.7e-13 79.7 275 33.8
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-13 79.7 194 38.1
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 3.7e-13 79.7 268 31.3
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 4.8e-13 79.3 193 40.4
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 6.3e-13 79.0 276 30.8
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 8.2e-13 78.6 259 34.4
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-12 78.2 203 36.5
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.1e-12 78.2 330 31.5
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 1.4e-12 77.8 278 29.9
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.1e-12 76.6 309 30.1
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 3.1e-12 76.6 372 27.4
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 1.2e-11 74.7 57 75.4
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.2e-11 74.7 245 33.5
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.5e-11 74.3 274 31.0
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.4e-11 73.2 118 43.2
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.5e-11 72.8 171 39.8
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.0e-10 71.6 260 34.6
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 2.2e-10 70.5 268 29.1
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 6.5e-10 68.9 259 30.5
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 4.2e-09 66.2 262 31.3
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 5.5e-09 65.9 290 30.0
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.2e-08 64.7 190 31.6
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.2e-08 64.7 218 31.7
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 2.7e-08 63.5 180 32.2
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.6e-08 63.2 91 46.2
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 7.9e-08 62.0 285 29.5
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.3e-07 61.2 239 30.5
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 3.9e-07 59.7 284 26.8
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 5.1e-07 59.3 38 71.1
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.7e-07 58.9 203 30.5
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.5e-06 57.0 265 27.2
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.5e-06 57.0 294 28.6


User provided reference genes

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