Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.3e-56 221.9 103 100.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 7.5e-39 163.7 75 89.3
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.3e-38 162.9 78 88.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.3e-38 162.9 77 88.3
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.9e-38 161.8 77 87.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.9e-38 161.0 83 81.9
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.9e-38 161.0 83 81.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 6.4e-38 160.6 82 80.5
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.1e-37 159.8 97 74.2
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.4e-37 158.7 82 80.5
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 3.2e-37 158.3 83 80.7
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 3.2e-37 158.3 82 80.5
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.2e-37 158.3 87 74.7
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 3.2e-37 158.3 77 87.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 4.1e-37 157.9 102 68.6
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.1e-37 157.9 86 77.9
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 4.1e-37 157.9 86 79.1
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 5.4e-37 157.5 98 69.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 5.4e-37 157.5 83 81.9
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 5.4e-37 157.5 98 69.4
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 5.4e-37 157.5 98 69.4
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 7.0e-37 157.1 82 78.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 7.0e-37 157.1 85 80.0
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 9.2e-37 156.8 82 79.3
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 9.2e-37 156.8 82 79.3
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 9.2e-37 156.8 86 80.2
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 9.2e-37 156.8 75 85.3
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.6e-36 156.0 87 75.9
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.6e-36 156.0 75 85.3
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.1e-36 155.6 101 69.3
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.1e-36 155.6 82 80.5
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 2.7e-36 155.2 81 80.2
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 6.0e-36 154.1 82 80.5
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.0e-35 153.3 77 83.1
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.3e-35 152.9 75 84.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.7e-35 152.5 75 84.0
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.3e-35 152.1 74 83.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.3e-35 152.1 82 76.8
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 3.0e-35 151.8 77 81.8
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.9e-35 151.4 82 78.0
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 5.1e-35 151.0 81 77.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.1e-35 151.0 83 77.1
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 6.6e-35 150.6 75 81.3
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 6.6e-35 150.6 82 79.3
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 6.6e-35 150.6 77 81.8
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 8.6e-35 150.2 83 75.9
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 8.6e-35 150.2 86 76.7
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.5e-34 149.4 86 76.7
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.5e-34 149.4 83 73.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.5e-34 149.4 81 76.5
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.9e-34 149.1 81 76.5
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.9e-34 149.1 84 75.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.5e-34 148.7 91 70.3
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.5e-34 148.7 77 80.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 2.5e-34 148.7 83 75.9
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 2.5e-34 148.7 83 77.1
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 2.5e-34 148.7 86 76.7
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 2.5e-34 148.7 83 73.5
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.3e-34 148.3 82 74.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 4.3e-34 147.9 79 75.9
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 7.3e-34 147.1 83 74.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.6e-33 146.0 87 71.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.8e-33 145.2 84 76.2
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.6e-33 144.8 84 73.8
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 3.6e-33 144.8 84 72.6
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.6e-33 144.8 78 75.6
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 3.6e-33 144.8 75 81.3
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.7e-33 144.4 82 75.6
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 6.2e-33 144.1 82 74.4
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 6.2e-33 144.1 77 77.9
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.1e-32 143.3 100 67.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.1e-32 143.3 84 75.0
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.8e-32 142.5 78 76.9
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.1e-32 141.7 89 71.9
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 4.0e-32 141.4 86 73.3
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 3.4e-31 138.3 129 51.2
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.3e-30 136.3 89 68.5
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 4.9e-30 134.4 74 74.3
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 8.1e-25 117.1 137 43.1
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 7.1e-21 104.0 70 64.3
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 7.8e-20 100.5 75 60.0
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.3e-17 93.2 186 31.7
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.3e-17 93.2 42 90.5
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.1e-16 90.1 40 90.0
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.2e-15 86.7 39 92.3
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 2.6e-15 85.5 43 81.4
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 7.6e-15 84.0 39 87.2
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 5.4e-13 77.8 47 68.1
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 7.1e-13 77.4 44 70.5
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 2.1e-12 75.9 45 68.9
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 4.6e-12 74.7 43 67.4
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 6.0e-12 74.3 37 83.8
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 6.6e-11 70.9 88 39.8
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 8.7e-11 70.5 88 40.9
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.1e-10 70.1 85 40.0
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.1e-10 70.1 95 38.9
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.5e-10 69.7 104 34.6
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.9e-10 69.3 88 39.8
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.9e-10 69.3 91 38.5
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.9e-10 69.3 45 64.4
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.5e-10 68.9 81 42.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 3.3e-10 68.6 80 38.8
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 3.3e-10 68.6 99 40.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 3.3e-10 68.6 77 44.2
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 4.3e-10 68.2 84 40.5
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 4.3e-10 68.2 77 42.9
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 4.3e-10 68.2 77 42.9
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 4.3e-10 68.2 77 42.9
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.3e-10 68.2 90 38.9
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 4.3e-10 68.2 77 42.9
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.6e-10 67.8 82 40.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.3e-10 67.4 82 40.2
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 9.6e-10 67.0 96 36.5
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 9.6e-10 67.0 83 39.8
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.3e-09 66.6 98 35.7
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.3e-09 66.6 98 35.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.3e-09 66.6 89 38.2
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 1.3e-09 66.6 93 38.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.6e-09 66.2 81 39.5
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.6e-09 66.2 30 90.0
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.6e-09 66.2 92 39.1
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.6e-09 66.2 77 40.3
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.6e-09 66.2 87 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 2.1e-09 65.9 77 41.6
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.1e-09 65.9 86 38.4
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.8e-09 65.5 86 38.4
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 2.8e-09 65.5 86 38.4
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 2.8e-09 65.5 95 34.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.8e-09 65.5 85 37.6
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 2.8e-09 65.5 91 35.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 2.8e-09 65.5 77 41.6
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.6e-09 65.1 81 39.5
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 3.6e-09 65.1 77 40.3
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 3.6e-09 65.1 85 37.6
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.6e-09 65.1 77 39.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.6e-09 65.1 77 40.3
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 3.6e-09 65.1 77 40.3
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 4.8e-09 64.7 81 38.3
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 4.8e-09 64.7 90 37.8
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 4.8e-09 64.7 81 39.5
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 6.2e-09 64.3 82 32.9
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 6.2e-09 64.3 77 41.6
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 6.2e-09 64.3 100 32.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 6.2e-09 64.3 77 40.3
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 6.2e-09 64.3 77 39.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 8.1e-09 63.9 77 40.3
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 8.1e-09 63.9 92 37.0
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.1e-08 63.5 81 39.5
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.8e-08 62.8 82 37.8
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.8e-08 62.8 105 35.2
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.8e-08 62.8 81 38.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 2.4e-08 62.4 79 35.4
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 2.4e-08 62.4 77 37.7
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 3.1e-08 62.0 120 32.5
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 3.1e-08 62.0 77 39.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 3.1e-08 62.0 94 35.1
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.0e-08 61.6 97 32.0
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 6.9e-08 60.8 95 35.8
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 6.9e-08 60.8 88 36.4
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 9.0e-08 60.5 102 32.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 9.0e-08 60.5 85 37.6
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 9.0e-08 60.5 85 37.6
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 9.0e-08 60.5 85 37.6
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 9.0e-08 60.5 85 37.6
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 9.0e-08 60.5 77 39.0
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 9.0e-08 60.5 77 36.4
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.2e-07 60.1 94 35.1
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 2.0e-07 59.3 106 33.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.6e-07 58.9 114 30.7
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 2.6e-07 58.9 79 38.0
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 9.9e-07 57.0 109 30.3
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.7e-06 56.2 85 34.1
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 2.2e-06 55.8 92 34.8
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.9e-06 55.5 77 32.5
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 4.9e-06 54.7 70 38.6
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 4.9e-06 54.7 96 31.2
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 6.4e-06 54.3 75 32.0


User provided reference genes

Program Settings