Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 5.8e-239 830.5 416 100.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-213 745.3 421 89.1
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.5e-210 736.1 419 88.3
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.3e-209 733.0 419 87.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.5e-183 646.4 402 77.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.6e-183 645.6 416 76.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.5e-181 639.0 390 78.5
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.5e-181 639.0 416 76.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.2e-181 638.6 428 74.1
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 5.5e-181 637.9 430 73.3
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.4e-179 633.3 392 79.6
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 3.0e-179 632.1 392 77.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.0e-179 632.1 392 78.8
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.9e-179 631.7 390 78.5
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 5.1e-179 631.3 419 74.7
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.7e-179 630.9 419 74.7
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 8.8e-179 630.6 407 75.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.0e-178 629.4 390 77.2
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.0e-178 629.4 390 78.7
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.0e-178 629.4 419 74.5
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.6e-178 629.0 407 75.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.6e-178 629.0 394 78.2
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 3.3e-178 628.6 394 77.7
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 3.3e-178 628.6 392 77.0
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.7e-178 627.9 392 77.0
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 7.4e-178 627.5 392 76.5
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 9.7e-178 627.1 392 78.3
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 1.3e-177 626.7 392 77.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.7e-177 625.2 392 77.0
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 6.3e-177 624.4 392 76.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 8.2e-177 624.0 392 77.3
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.1e-176 621.7 411 74.9
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 4.1e-176 621.7 428 72.4
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 4.1e-176 621.7 392 78.6
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 7.0e-176 620.9 392 76.8
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.2e-175 620.2 419 73.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.0e-175 619.4 390 76.9
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.6e-175 619.0 415 73.3
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 5.9e-175 617.8 392 76.5
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 7.7e-175 617.5 392 76.0
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-174 617.1 392 75.5
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.3e-174 616.7 392 76.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.7e-174 616.3 392 75.5
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.2e-174 615.9 388 76.5
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 2.2e-174 615.9 444 71.4
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.2e-174 615.9 402 74.4
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 5.0e-174 614.8 390 76.4
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 6.5e-174 614.4 392 75.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 8.5e-174 614.0 426 73.2
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.9e-173 612.8 392 76.3
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 3.2e-173 612.1 390 76.2
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 7.2e-173 610.9 392 75.3
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 9.4e-173 610.5 411 74.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.2e-172 610.1 390 74.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.7e-172 609.0 388 75.8
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.7e-172 608.2 411 73.7
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.7e-172 608.2 403 74.7
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.0e-171 607.1 389 75.1
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.4e-171 606.7 392 75.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.4e-171 606.7 393 74.6
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.0e-171 605.5 390 75.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 4.0e-171 605.1 393 74.6
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.0e-171 605.1 414 72.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 6.7e-171 604.4 392 75.0
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.5e-170 603.2 402 72.6
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 3.3e-170 602.1 392 73.7
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 5.7e-170 601.3 402 72.1
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 6.3e-169 597.8 407 72.5
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.8e-168 596.3 392 74.0
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 2.4e-168 595.9 373 78.8
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 9.1e-168 594.0 392 73.5
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 8.5e-166 587.4 403 71.5
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 8.5e-166 587.4 397 73.3
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.1e-165 587.0 403 71.5
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.1e-165 587.0 392 71.9
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 4.2e-165 585.1 404 70.8
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 9.4e-165 583.9 399 72.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.7e-164 582.4 402 71.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.7e-164 582.4 402 71.1
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 6.1e-164 581.3 390 73.3
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.5e-162 576.6 401 68.8
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.8e-161 572.4 404 70.8
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.5e-157 560.1 392 68.6
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.6e-156 556.6 388 71.4
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 6.8e-155 551.2 405 67.9
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.3e-153 544.7 393 65.9
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 6.3e-153 544.7 346 76.3
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.1e-152 543.9 346 75.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.8e-152 543.1 346 76.0
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.5e-151 538.9 539 55.1
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 7.7e-151 537.7 425 65.6
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 7.7e-151 537.7 369 71.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.3e-149 531.9 332 76.2
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 8.3e-145 517.7 372 71.0
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 4.1e-144 515.4 344 70.9
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 3.0e-142 509.2 390 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.6e-140 502.3 381 62.5
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 8.0e-140 501.1 355 68.7
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 3.1e-139 499.2 388 65.2
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.5e-138 496.9 338 69.8
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.2e-137 493.0 379 63.1
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 8.1e-132 474.6 308 74.7
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.7e-127 459.5 334 67.1
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 7.6e-122 441.4 373 60.9
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.9e-118 429.1 298 69.1
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 1.5e-114 417.2 319 68.0
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.9e-112 410.2 374 53.5
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.6e-108 396.0 277 69.7
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.9e-107 391.7 265 72.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.5e-106 389.0 262 71.4
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 6.0e-103 378.6 317 59.0
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.8e-100 369.8 408 48.3
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.9e-97 359.0 320 59.1
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 2.1e-95 353.6 230 73.0
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.2e-87 327.8 399 43.6
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.1e-87 327.0 372 45.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 3.3e-61 240.0 170 63.5
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.4e-61 239.6 221 59.3
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.4e-61 239.6 249 50.6
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.3e-54 217.2 129 81.4
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.3e-52 209.1 157 70.1
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.5e-49 198.7 339 33.3
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 4.2e-48 196.4 159 63.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 7.2e-48 195.7 122 76.2
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-47 192.6 167 55.7
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 7.0e-35 152.5 158 54.4
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 5.0e-33 146.4 84 84.5
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.5e-29 134.8 416 29.6
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.6e-26 124.8 101 68.3
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.6e-23 114.8 95 64.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 5.8e-21 106.3 68 79.4
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 9.2e-19 99.0 64 62.5
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 2.1e-15 87.8 49 81.6
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.8e-13 79.7 68 58.8
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 7.5e-13 79.3 66 63.6
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.1e-11 75.5 62 58.1
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 8.6e-09 65.9 51 58.8
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 4.7e-07 60.1 146 31.5
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 1.1e-06 58.9 146 30.8
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.4e-06 58.5 37 75.7


User provided reference genes

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