Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 2.6e-43 178.3 92 100.0
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.6e-16 89.4 81 66.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.6e-14 82.0 76 60.5
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 1.7e-13 79.3 91 52.7
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.4e-12 76.3 82 53.7
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.4e-12 74.3 95 50.5
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 1.6e-11 72.8 58 60.3
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 2.7e-11 72.0 80 53.8
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 2.7e-11 72.0 57 61.4
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.5e-11 71.2 80 53.8
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 7.8e-11 70.5 95 48.4
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 1.0e-10 70.1 83 51.8
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.3e-10 69.7 61 62.3
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.3e-10 69.7 84 48.8
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.3e-10 69.7 84 48.8
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.3e-10 69.7 84 48.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.7e-10 69.3 85 47.1
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.3e-10 68.9 75 54.7
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.3e-10 68.9 75 54.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 2.9e-10 68.6 82 46.3
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 3.8e-10 68.2 80 51.2
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.8e-10 68.2 80 47.5
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 5.0e-10 67.8 82 50.0
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 6.6e-10 67.4 88 48.9
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.6e-10 67.4 88 46.6
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 8.6e-10 67.0 71 52.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 8.6e-10 67.0 88 48.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.6e-10 67.0 81 44.4
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 8.6e-10 67.0 98 48.0
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.1e-09 66.6 74 51.4
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 1.1e-09 66.6 58 60.3
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.1e-09 66.6 82 48.8
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.1e-09 66.6 94 47.9
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.1e-09 66.6 97 47.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.5e-09 66.2 87 49.4
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.5e-09 66.2 58 56.9
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.5e-09 66.2 75 48.0
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.9e-09 65.9 84 48.8
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.9e-09 65.9 65 50.8
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.9e-09 65.9 92 46.7
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.9e-09 65.9 82 48.8
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.5e-09 65.5 70 51.4
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 2.5e-09 65.5 80 48.8
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.5e-09 65.5 93 43.0
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.5e-09 65.5 80 51.2
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.3e-09 65.1 78 51.3
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 3.3e-09 65.1 79 49.4
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.3e-09 65.1 79 49.4
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 4.3e-09 64.7 84 47.6
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.6e-09 64.3 70 50.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 5.6e-09 64.3 88 46.6
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 5.6e-09 64.3 72 48.6
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 7.3e-09 63.9 58 53.4
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.5e-09 63.5 70 50.0
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.2e-08 63.2 61 55.7
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.2e-08 63.2 77 44.2
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 1.2e-08 63.2 64 53.1
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.6e-08 62.8 88 39.8
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 1.6e-08 62.8 57 57.9
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.6e-08 62.8 67 50.7
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.1e-08 62.4 65 52.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.1e-08 62.4 62 51.6
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 2.1e-08 62.4 69 52.2
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.1e-08 62.4 68 50.0
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 2.1e-08 62.4 73 52.1
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 2.1e-08 62.4 71 49.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.1e-08 62.4 55 58.2
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 2.8e-08 62.0 75 46.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.8e-08 62.0 81 44.4
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.6e-08 61.6 62 54.8
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.7e-08 61.2 75 48.0
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 4.7e-08 61.2 69 47.8
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.1e-08 60.8 63 50.8
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 6.1e-08 60.8 55 56.4
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.1e-08 60.8 77 49.4
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 8.0e-08 60.5 79 41.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.0e-08 60.5 87 46.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 8.0e-08 60.5 66 53.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 8.0e-08 60.5 55 54.5
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 8.0e-08 60.5 83 44.6
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.0e-07 60.1 83 44.6
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.0e-07 60.1 83 39.8
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.0e-07 60.1 68 47.1
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.4e-07 59.7 95 46.3
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 1.4e-07 59.7 45 62.2
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.4e-07 59.7 85 43.5
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.8e-07 59.3 63 49.2
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.3e-07 58.9 75 45.3
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 2.3e-07 58.9 42 64.3
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 2.3e-07 58.9 62 50.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.0e-07 58.5 63 49.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.0e-07 58.5 69 46.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.0e-07 58.2 53 54.7
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 4.0e-07 58.2 57 50.9
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 4.0e-07 58.2 79 44.3
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 4.0e-07 58.2 92 43.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.0e-07 58.2 55 52.7
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 5.2e-07 57.8 46 58.7
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 5.2e-07 57.8 46 58.7
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 6.8e-07 57.4 76 48.7
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 8.9e-07 57.0 74 51.4
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 8.9e-07 57.0 53 58.5
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.2e-06 56.6 59 50.8
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 1.2e-06 56.6 58 51.7
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 1.2e-06 56.6 45 57.8
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 1.2e-06 56.6 83 41.0
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.2e-06 56.6 50 56.0
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.5e-06 56.2 58 51.7
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.5e-06 56.2 63 50.8
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 2.0e-06 55.8 38 68.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-06 55.8 75 44.0
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 2.6e-06 55.5 74 50.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.6e-06 55.5 63 46.0
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.6e-06 55.5 66 45.5
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 2.6e-06 55.5 52 51.9
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 3.4e-06 55.1 83 42.2
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 3.4e-06 55.1 49 59.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.4e-06 54.7 68 52.9
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 4.4e-06 54.7 75 49.3
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 4.4e-06 54.7 80 43.8
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 4.4e-06 54.7 87 41.4
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.7e-06 54.3 71 43.7
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 5.7e-06 54.3 65 43.1
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 5.7e-06 54.3 56 51.8
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 7.5e-06 53.9 76 47.4
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 7.5e-06 53.9 73 46.6
Lsat_1_v5_gn_7_3900 Lactuca sativa HOM05D055552 ORTHO05D045220 7.5e-06 53.9 86 45.3
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 7.5e-06 53.9 45 55.6
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 9.8e-06 53.5 51 51.0
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 9.8e-06 53.5 49 57.1


User provided reference genes

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