Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 5.5e-105 384.4 209 100.0
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 4.6e-67 258.5 210 72.9
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 6.4e-61 238.0 214 66.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 5.8e-54 214.9 211 61.1
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.7e-53 213.4 205 62.9
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.1e-52 208.8 203 62.6
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.2e-51 207.2 208 60.1
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.9e-50 202.2 208 61.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.9e-50 202.2 208 61.1
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.5e-49 200.3 209 56.0
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.3e-49 198.0 206 58.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 9.5e-49 197.6 208 61.5
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.6e-48 196.8 215 57.2
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.4e-47 193.7 208 56.2
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 4.0e-47 192.2 208 61.1
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.2e-47 191.8 209 54.1
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.2e-47 191.8 209 54.1
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.2e-46 190.7 209 55.0
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.2e-46 190.7 208 54.8
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.6e-46 189.5 207 55.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.4e-46 189.1 210 54.3
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.8e-46 188.3 209 53.6
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 9.9e-46 187.6 210 57.6
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.2e-45 186.4 205 53.7
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.2e-45 186.4 212 53.8
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 2.9e-45 186.0 209 53.1
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.4e-45 184.9 206 53.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.4e-45 184.9 209 53.6
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-44 184.1 208 57.7
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.4e-44 183.7 205 57.6
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.9e-44 183.3 205 53.2
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.9e-44 183.3 207 53.6
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.4e-44 183.0 205 57.1
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.2e-44 182.6 211 55.9
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.4e-44 181.8 211 51.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 5.4e-44 181.8 211 55.5
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 5.4e-44 181.8 212 53.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 7.1e-44 181.4 207 54.1
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.1e-44 181.4 207 54.1
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.1e-44 181.4 209 52.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 7.1e-44 181.4 206 54.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 9.2e-44 181.0 217 53.5
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.2e-43 180.6 210 51.4
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.2e-43 180.6 209 52.6
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.6e-43 180.3 207 56.0
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.6e-43 180.3 207 55.1
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 6.0e-43 178.3 207 56.5
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.0e-43 178.3 217 52.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 7.8e-43 177.9 209 53.6
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.0e-42 177.6 209 52.2
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.3e-42 177.2 216 52.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-42 177.2 207 53.1
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.3e-42 176.4 210 51.4
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.3e-42 176.4 210 51.9
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 5.1e-42 175.3 210 51.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 5.1e-42 175.3 208 52.9
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 8.7e-42 174.5 209 49.8
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.7e-42 174.5 209 50.2
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.1e-41 174.1 208 51.9
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.5e-41 173.7 210 51.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.5e-41 173.7 209 50.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.5e-41 173.7 205 52.7
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.5e-41 172.9 209 55.0
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.3e-41 172.6 216 52.8
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.3e-41 172.6 208 55.8
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-41 172.6 208 52.9
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.3e-41 172.2 205 53.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 7.3e-41 171.4 210 50.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 7.3e-41 171.4 209 51.7
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 9.6e-41 171.0 207 50.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 9.6e-41 171.0 210 49.5
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 9.6e-41 171.0 207 51.2
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.3e-40 170.6 211 53.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.6e-40 170.2 207 49.3
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.6e-40 170.2 211 49.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.1e-40 169.9 207 50.2
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.1e-40 169.9 209 48.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 1.4e-39 167.2 207 50.2
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.4e-39 166.4 208 48.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.4e-39 166.4 156 57.1
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 6.9e-39 164.9 208 47.6
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 6.9e-39 164.9 207 51.2
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.9e-39 164.9 209 51.2
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-38 164.1 206 54.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.5e-38 163.7 207 47.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-38 163.7 192 56.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.0e-38 163.3 210 50.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.4e-38 162.5 208 47.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 4.4e-38 162.2 209 49.8
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.8e-38 161.8 153 60.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 7.6e-38 161.4 209 47.8
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 7.6e-38 161.4 206 49.0
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-37 160.6 208 53.4
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.7e-37 160.2 208 47.6
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.8e-37 159.1 209 49.8
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 3.8e-37 159.1 203 47.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 8.4e-37 157.9 207 49.8
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.4e-36 157.1 207 49.8
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.4e-36 156.4 213 52.1
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 4.2e-36 155.6 209 46.9
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 4.2e-36 155.6 208 46.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.4e-36 155.2 211 47.9
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 9.3e-36 154.5 207 46.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.2e-35 154.1 205 47.3
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-35 152.5 193 53.4
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 4.6e-35 152.1 216 46.3
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.6e-35 152.1 205 46.3
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.0e-34 151.0 209 46.9
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.3e-34 149.8 153 60.1
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.0e-34 149.4 148 58.1
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.1e-33 147.5 210 44.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.5e-33 147.1 207 45.4
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.3e-33 146.0 200 50.5
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.2e-32 141.7 205 42.9
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.4e-31 139.8 191 46.6
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 3.1e-31 139.4 145 57.9
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 3.8e-29 132.5 204 42.6
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.9e-28 130.2 150 42.7
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.4e-28 129.8 145 51.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 7.1e-28 128.3 162 43.2
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 1.2e-27 127.5 213 46.9
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.6e-27 127.1 217 39.2
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.1e-27 126.7 127 55.9
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.7e-27 126.3 119 60.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 4.6e-27 125.6 151 49.0
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 7.9e-27 124.8 105 57.1
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.3e-26 124.0 198 39.4
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 5.1e-26 122.1 159 47.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 8.7e-26 121.3 92 64.1
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.5e-25 120.6 171 41.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.3e-25 119.0 153 42.5
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 6.2e-24 115.2 130 49.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.1e-23 114.4 188 36.2
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-23 114.0 153 46.4
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 8.4e-21 104.8 91 56.0
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-19 100.9 154 39.6
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.5e-19 99.4 156 37.8
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 6.0e-19 98.6 91 50.5
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.8e-18 97.1 193 34.7
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 6.7e-18 95.1 114 56.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.5e-17 94.0 88 48.9
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.5e-17 93.2 88 48.9
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 2.5e-17 93.2 107 46.7
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 4.3e-17 92.4 88 52.3
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 7.4e-17 91.7 94 52.1
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.6e-16 90.5 210 36.7
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.1e-16 90.1 89 51.7
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.3e-15 85.5 119 48.7
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.9e-15 85.1 150 38.0
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.6e-14 83.2 119 47.9
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 6.1e-11 72.0 101 47.5
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.3e-09 66.2 98 48.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 8.2e-08 61.6 114 39.5
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.1e-07 61.2 184 37.0
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 5.3e-07 58.9 78 46.2
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.5e-06 57.4 81 44.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 5.9e-06 55.5 88 40.9


User provided reference genes

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